| 1000 | 12903981 | Am17 | Aortic mass QTL 17 | | 0.001 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 634350 | Apr4 | Acute phase response QTL 4 | 6 | | orosomucoid 1 amount (VT:0010541) | plasma orosomucoid 1 level (CMO:0001467) | 12 | 1172005 | 46172005 | Rat | n/a | region | qtl |
| 1000 | 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 12 | 1 | 44503507 | Rat | n/a | region | qtl |
| 1000 | 1300123 | Bp194 | Blood pressure QTL 194 | 2.82 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 2115149 | 34551001 | Rat | n/a | region | qtl |
| 1000 | 1354619 | Bp242 | Blood pressure QTL 242 | 6.3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 17 | 24599340 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1354581 | Bp247 | Blood pressure QTL 247 | 4.5 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 17 | 1 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1559055 | Bp278 | Blood pressure QTL 278 | | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 1598855 | Bp294 | Blood pressure QTL 294 | 3.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 1 | 34851688 | Rat | n/a | region | qtl |
| 1000 | 2313854 | Bp343 | Blood pressure QTL 343 | 3.9 | | life span trait (VT:0005372) | age at time of death (CMO:0001193) | 17 | 31990784 | 50909196 | Rat | n/a | region | qtl |
| 1000 | 7488966 | Bp370 | Blood pressure QTL 370 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 23653184 | 57246843 | Rat | n/a | region | qtl |
| 1000 | 10450503 | Bp386 | Blood pressure QTL 386 | | 0.28 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 31368391 | 62109574 | Rat | n/a | region | qtl |
| 1000 | 61394 | Bp8 | Blood pressure QTL 8 | 2.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 17 | 23080567 | 59555013 | Rat | n/a | region | qtl |
| 1000 | 4889955 | Bss93 | Bone structure and strength QTL 93 | 4.4 | | tibia size trait (VT:0100001) | tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727) | 17 | 27027949 | 60463643 | Rat | n/a | region | qtl |
| 1000 | 1354663 | Bvd5 | Brain ventricular dilatation QTL 5 | 3.51 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 17 | 31990784 | 81292925 | Rat | n/a | region | qtl |
| 1000 | 6893681 | Bw109 | Body weight QTL 109 | 2.3 | 0.004 | body mass (VT:0001259) | body weight (CMO:0000012) | 12 | 1 | 23297788 | Rat | n/a | region | qtl |
| 1000 | 7411545 | Bw128 | Body weight QTL 128 | 5.2 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411547 | Bw129 | Body weight QTL 129 | | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 6 | 5564495 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 1300174 | Bw15 | Body weight QTL 15 | 2.93 | | body mass (VT:0001259) | body weight loss (CMO:0001399) | 12 | 1 | 9318387 | Rat | n/a | region | qtl |
| 1000 | 8694179 | Bw150 | Body weight QTL 150 | 2.9 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 1354596 | Bw32 | Body weight QTL 32 | 4.5 | | body mass (VT:0001259) | body weight (CMO:0000012) | 17 | 4299130 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 2303561 | Bw91 | Body weight QTL 91 | 2 | | body mass (VT:0001259) | body weight (CMO:0000012) | 17 | 8868462 | 53868462 | Rat | n/a | region | qtl |
| 1000 | 12903978 | Cm118 | Cardiac mass QTL 118 | | 0.001 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 12903979 | Cm119 | Cardiac mass QTL 119 | | 0.001 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 12903980 | Cm120 | Cardiac mass QTL 120 | | 0.002 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 1354630 | Cm34 | Cardiac mass QTL 34 | 8.7 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1581512 | Cm55 | Cardiac mass QTL 55 | 2.8 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 17 | 27027949 | 56836890 | Rat | n/a | region | qtl |
| 1000 | 1581516 | Cm56 | Cardiac mass QTL 56 | 4.2 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 12 | 1 | 29333307 | Rat | n/a | region | qtl |
| 1000 | 10755457 | Coatc14 | Coat color QTL 14 | | 0.01759 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 12 | 1 | 22591684 | Rat | n/a | region | qtl |
| 1000 | 2324621 | Coatc5 | Coat color QTL 5 | | | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 17 | 31368391 | 73951021 | Rat | n/a | region | qtl |
| 1000 | 4889891 | Eae32 | Experimental allergic encephalomyelitis QTL 32 | 4.8 | 0.0002 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 17 | 27027949 | 36146731 | Rat | n/a | region | qtl |
| 1000 | 1600391 | Edcs2 | Endometrial carcinoma susceptibility QTL2 | 3.5 | 0.01 | uterus morphology trait (VT:0001120) | percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) | 12 | 6833190 | 17870186 | Rat | n/a | region | qtl |
| 1000 | 7411597 | Foco10 | Food consumption QTL 10 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 7411641 | Foco19 | Food consumption QTL 19 | 27.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 7411660 | Foco28 | Food consumption QTL 28 | 10.9 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411586 | Foco5 | Food consumption QTL 5 | 5.4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411588 | Foco6 | Food consumption QTL 6 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 7411595 | Foco9 | Food consumption QTL 9 | 4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 1331765 | Hrtrt15 | Heart rate QTL 15 | 4.094 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 17 | 15330613 | 55836425 | Rat | n/a | region | qtl |
| 1000 | 2300002 | Iddm36 | Insulin dependent diabetes mellitus QTL 36 | 1.98 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 17 | 9991286 | 40540197 | Rat | n/a | region | qtl |
| 1000 | 9590086 | Insglur6 | Insulin/glucose ratio QTL 6 | 18.97 | 0.001 | blood insulin amount (VT:0001560) | calculated plasma insulin level (CMO:0002170) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 1354638 | Insul1 | Insulin level QTL 1 | 4.8 | | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 2303575 | Insul14 | Insulin level QTL 14 | 4 | | blood insulin amount (VT:0001560) | blood insulin level (CMO:0000349) | 12 | 1 | 42450532 | Rat | n/a | region | qtl |
| 1000 | 1354613 | Kidm14 | Kidney mass QTL 14 | 6.2 | | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 17 | 4299130 | 35837242 | Rat | n/a | region | qtl |
| 1000 | 2312418 | Kidm41 | Kidney mass QTL 41 | 3.7 | 0.0001 | kidney mass (VT:0002707) | single kidney wet weight to body weight ratio (CMO:0000622) | 12 | 1 | 19611090 | Rat | n/a | region | qtl |
| 1000 | 10059594 | Kidm46 | Kidney mass QTL 46 | 3.79 | 0.025 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 12 | 6107579 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 12903982 | Kidm70 | Kidney mass QTL 70 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 17 | 23653184 | 70974005 | Rat | n/a | region | qtl |
| 1000 | 1354651 | Lmblg2 | Limb length QTL 2 | 6 | | tibia length (VT:0004357) | tibia length (CMO:0000450) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 7243862 | Mcs30 | Mammary carcinoma susceptibility QTL 30 | 8.62 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 12 | 797729 | 8525593 | Rat | n/a | region | qtl |
| 1000 | 7394837 | Memor18 | Memory QTL 18 | | | exploratory behavior trait (VT:0010471) | measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957) | 17 | 18640182 | 63640182 | Rat | n/a | region | qtl |
| 1000 | 70157 | Niddm32 | Non-insulin dependent diabetes mellitus QTL 32 | 4.34 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 17 | 22454924 | 50909196 | Rat | n/a | region | qtl |
| 1000 | 631207 | Niddm41 | Non-insulin dependent diabetes mellitus QTL 41 | | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 17 | 1 | 37830672 | Rat | n/a | region | qtl |
| 1000 | 724549 | Niddm56 | Non-insulin dependent diabetes mellitus QTL 56 | | 0.03 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 17 | 31990784 | 76990784 | Rat | n/a | region | qtl |
| 1000 | 737979 | Pia22 | Pristane induced arthritis QTL 22 | 53.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 1 | 44465750 | Rat | n/a | region | qtl |
| 1000 | 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 12 | 1 | 44503507 | Rat | n/a | region | qtl |
| 1000 | 8552964 | Pigfal17 | Plasma insulin-like growth factor 1 level QTL 17 | 3.5 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 8552912 | Pigfal6 | Plasma insulin-like growth factor 1 level QTL 6 | 5 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564498 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 8552918 | Pigfal7 | Plasma insulin-like growth factor 1 level QTL 7 | | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564495 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 8552928 | Pigfal9 | Plasma insulin-like growth factor 1 level QTL 9 | 9 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 17 | 28409147 | 73409147 | Rat | n/a | region | qtl |
| 1000 | 1354662 | Rf49 | Renal function QTL 49 | 2.9 | | blood creatinine amount (VT:0005328) | plasma creatinine level (CMO:0000537) | 17 | 1 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1302792 | Scl21 | Serum cholesterol level QTL 21 | 3.8 | 0.0011 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 12 | 7196730 | 46669029 | Rat | n/a | region | qtl |
| 1000 | 1354640 | Scl32 | Serum cholesterol level QTL 32 | 5.4 | | blood HDL cholesterol amount (VT:0000184) | blood high density lipoprotein cholesterol level (CMO:0000052) | 17 | 15781592 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 2302377 | Scl61 | Serum cholesterol level QTL 61 | 4.36 | | blood HDL cholesterol amount (VT:0000184) | serum high density lipoprotein cholesterol level (CMO:0000361) | 17 | 27389946 | 53481766 | Rat | n/a | region | qtl |
| 1000 | 1354659 | Scl68 | Serum cholesterol level QTL 68 | 3.9 | | blood VLDL cholesterol amount (VT:0005144) | blood very low density lipoprotein cholesterol level (CMO:0000648) | 17 | 15781592 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 10054088 | Scort28 | Serum corticosterone level QTL 28 | 2.04 | 0.0102 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 17 | 4528038 | 49528038 | Rat | n/a | region | qtl |
| 1000 | 9590147 | Scort7 | Serum corticosterone level QTL 7 | 13.61 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 9590107 | Sffal7 | Serum free fatty acids level QTL 7 | 4.81 | 0.001 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 17 | 28409147 | 73409147 | Rat | n/a | region | qtl |
| 1000 | 1354658 | Spl8 | Serum phospholipid level QTL 8 | 3.8 | | blood VLDL phospholipid amount (VT:0010507) | blood very low density lipoprotein phospholipid level (CMO:0001571) | 17 | 1 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1354628 | Stl13 | Serum triglyceride level QTL 13 | 3.8 | | blood triglyceride amount (VT:0002644) | blood triglyceride level (CMO:0000118) | 17 | 21293039 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 724526 | Uae3 | Urinary albumin excretion QTL 3 | 4.9 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 12 | 3906969 | 10373166 | Rat | n/a | region | qtl |
| 1000 | 2303627 | Vencon8 | Ventilatory control QTL 8 | | 0.001 | respiration trait (VT:0001943) | tidal volume (CMO:0000222) | 17 | 4528038 | 49528038 | Rat | n/a | region | qtl |