| 1000 | 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 1598852 | Anxrr19 | Anxiety related response QTL 19 | 5.07 | | body movement coordination trait (VT:0005424) | number of rearing movements in an experimental apparatus (CMO:0001752) | 10 | 18167841 | 63167841 | Rat | n/a | region | qtl |
| 1000 | 631564 | Apr3 | Acute phase response QTL 3 | 3.9 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 10 | 15275955 | 60275955 | Rat | n/a | region | qtl |
| 1000 | 634350 | Apr4 | Acute phase response QTL 4 | 6 | | orosomucoid 1 amount (VT:0010541) | plasma orosomucoid 1 level (CMO:0001467) | 12 | 1172005 | 46172005 | Rat | n/a | region | qtl |
| 1000 | 634350 | Apr4 | Acute phase response QTL 4 | 6 | | orosomucoid 1 amount (VT:0010541) | plasma orosomucoid 1 level (CMO:0001467) | 12 | 1172005 | 46172005 | Rat | n/a | region | qtl |
| 1000 | 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 12 | 1 | 44503507 | Rat | n/a | region | qtl |
| 1000 | 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 12 | 1 | 44503507 | Rat | n/a | region | qtl |
| 1000 | 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 19816042 | 99406971 | Rat | n/a | region | qtl |
| 1000 | 2300171 | Bmd58 | Bone mineral density QTL 58 | 4.9 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 26944628 | 71944628 | Rat | n/a | region | qtl |
| 1000 | 2313064 | Bmd71 | Bone mineral density QTL 71 | 0.9 | 0.0001 | tibia mineral mass (VT:1000283) | compact volumetric bone mineral density (CMO:0001730) | 10 | 5387014 | 50387014 | Rat | n/a | region | qtl |
| 1000 | 2313087 | Bmd80 | Bone mineral density QTL 80 | 3.2 | 0.0001 | tibia mineral mass (VT:1000283) | total volumetric bone mineral density (CMO:0001728) | 10 | 19606483 | 64606483 | Rat | n/a | region | qtl |
| 1000 | 631554 | Bp133 | Blood pressure QTL 133 | | 0.005 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 743364 | 63851208 | Rat | n/a | region | qtl |
| 1000 | 724527 | Bp148 | Blood pressure QTL 148 | | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 28453136 | 73453136 | Rat | n/a | region | qtl |
| 1000 | 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98003205 | Rat | n/a | region | qtl |
| 1000 | 1598855 | Bp294 | Blood pressure QTL 294 | 3.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 1 | 34851688 | Rat | n/a | region | qtl |
| 1000 | 1598855 | Bp294 | Blood pressure QTL 294 | 3.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 1 | 34851688 | Rat | n/a | region | qtl |
| 1000 | 2292441 | Bp308 | Blood pressure QTL 308 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 27606468 | 72606468 | Rat | n/a | region | qtl |
| 1000 | 10402859 | Bp381 | Blood pressure QTL 381 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 27606468 | 72606468 | Rat | n/a | region | qtl |
| 1000 | 70223 | Bp57 | Blood pressure QTL 57 | 5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 1 | 80676123 | Rat | n/a | region | qtl |
| 1000 | 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98952741 | Rat | n/a | region | qtl |
| 1000 | 2293680 | Bss40 | Bone structure and strength QTL 40 | 5.66 | 0.0001 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 10 | 1 | 35225947 | Rat | n/a | region | qtl |
| 1000 | 2313104 | Bss61 | Bone structure and strength QTL 61 | 0.9 | 0.0001 | tibia area (VT:1000281) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 5387014 | 50387014 | Rat | n/a | region | qtl |
| 1000 | 2313095 | Bss62 | Bone structure and strength QTL 62 | 1.5 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 5387014 | 50387014 | Rat | n/a | region | qtl |
| 1000 | 2313066 | Bss63 | Bone structure and strength QTL 63 | 1.4 | 0.0001 | tibia strength trait (VT:1000284) | bone polar moment of inertia (CMO:0001558) | 10 | 5387014 | 50387014 | Rat | n/a | region | qtl |
| 1000 | 2313081 | Bss64 | Bone structure and strength QTL 64 | 1.3 | 0.0001 | tibia strength trait (VT:1000284) | tibia total energy absorbed before break (CMO:0001736) | 10 | 5387014 | 50387014 | Rat | n/a | region | qtl |
| 1000 | 6893352 | Bw100 | Body weight QTL 100 | 0.33 | 0.6 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 15906665 | 60906665 | Rat | n/a | region | qtl |
| 1000 | 6893681 | Bw109 | Body weight QTL 109 | 2.3 | 0.004 | body mass (VT:0001259) | body weight (CMO:0000012) | 12 | 1 | 23297788 | Rat | n/a | region | qtl |
| 1000 | 6893681 | Bw109 | Body weight QTL 109 | 2.3 | 0.004 | body mass (VT:0001259) | body weight (CMO:0000012) | 12 | 1 | 23297788 | Rat | n/a | region | qtl |
| 1000 | 7411545 | Bw128 | Body weight QTL 128 | 5.2 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411545 | Bw128 | Body weight QTL 128 | 5.2 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 1300174 | Bw15 | Body weight QTL 15 | 2.93 | | body mass (VT:0001259) | body weight loss (CMO:0001399) | 12 | 1 | 9318387 | Rat | n/a | region | qtl |
| 1000 | 1300174 | Bw15 | Body weight QTL 15 | 2.93 | | body mass (VT:0001259) | body weight loss (CMO:0001399) | 12 | 1 | 9318387 | Rat | n/a | region | qtl |
| 1000 | 8694179 | Bw150 | Body weight QTL 150 | 2.9 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 8694179 | Bw150 | Body weight QTL 150 | 2.9 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 2313055 | Bw96 | Body weight QTL 96 | 3.6 | 0.0001 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 19606483 | 64606483 | Rat | n/a | region | qtl |
| 1000 | 6893350 | Bw99 | Body weight QTL 99 | 0.87 | 0.16 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 15906665 | 60906665 | Rat | n/a | region | qtl |
| 1000 | 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6357896 | 96121100 | Rat | n/a | region | qtl |
| 1000 | 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14487011 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 631532 | Cm50 | Cardiac mass QTL 50 | 6.6 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 10 | 17907113 | 51786432 | Rat | n/a | region | qtl |
| 1000 | 1581516 | Cm56 | Cardiac mass QTL 56 | 4.2 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 12 | 1 | 29333307 | Rat | n/a | region | qtl |
| 1000 | 1581516 | Cm56 | Cardiac mass QTL 56 | 4.2 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 12 | 1 | 29333307 | Rat | n/a | region | qtl |
| 1000 | 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14487011 | 89062041 | Rat | n/a | region | qtl |
| 1000 | 10755457 | Coatc14 | Coat color QTL 14 | | 0.01759 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 12 | 1 | 22591684 | Rat | n/a | region | qtl |
| 1000 | 10755457 | Coatc14 | Coat color QTL 14 | | 0.01759 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 12 | 1 | 22591684 | Rat | n/a | region | qtl |
| 1000 | 70224 | Eae3 | Experimental allergic encephalomyelitis QTL 3 | 4.1 | | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) | 10 | 26521957 | 61345413 | Rat | n/a | region | qtl |
| 1000 | 2298480 | Eau7 | Experimental allergic uveoretinitis QTL 7 | | 0.0049 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 27957626 | 34490668 | Rat | n/a | region | qtl |
| 1000 | 1581497 | Esta1 | Estrogen-induced thymic atrophy QTL 1 | | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 10 | 21329805 | 61345413 | Rat | n/a | region | qtl |
| 1000 | 7411611 | Foco17 | Food consumption QTL 17 | 18.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 1 | 42315980 | Rat | n/a | region | qtl |
| 1000 | 7411660 | Foco28 | Food consumption QTL 28 | 10.9 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411660 | Foco28 | Food consumption QTL 28 | 10.9 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411586 | Foco5 | Food consumption QTL 5 | 5.4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411586 | Foco5 | Food consumption QTL 5 | 5.4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411595 | Foco9 | Food consumption QTL 9 | 4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 7411595 | Foco9 | Food consumption QTL 9 | 4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14487011 | 107057807 | Rat | n/a | region | qtl |
| 1000 | 634327 | Hc4 | Hypercalciuria QTL 4 | 2.4 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 10 | 1 | 38328221 | Rat | n/a | region | qtl |
| 1000 | 9590086 | Insglur6 | Insulin/glucose ratio QTL 6 | 18.97 | 0.001 | blood insulin amount (VT:0001560) | calculated plasma insulin level (CMO:0002170) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 9590086 | Insglur6 | Insulin/glucose ratio QTL 6 | 18.97 | 0.001 | blood insulin amount (VT:0001560) | calculated plasma insulin level (CMO:0002170) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 2303575 | Insul14 | Insulin level QTL 14 | 4 | | blood insulin amount (VT:0001560) | blood insulin level (CMO:0000349) | 12 | 1 | 42450532 | Rat | n/a | region | qtl |
| 1000 | 2303575 | Insul14 | Insulin level QTL 14 | 4 | | blood insulin amount (VT:0001560) | blood insulin level (CMO:0000349) | 12 | 1 | 42450532 | Rat | n/a | region | qtl |
| 1000 | 9589136 | Insul27 | Insulin level QTL 27 | 10.46 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 10 | 11474010 | 56474010 | Rat | n/a | region | qtl |
| 1000 | 631531 | Iresp2 | Immunoglobin response QTL2 | 6.3 | | blood immunoglobulin E amount (VT:0002492) | serum immunoglobulin E level (CMO:0002101) | 10 | 22918268 | 36400810 | Rat | n/a | region | qtl |
| 1000 | 1354587 | Kidm21 | Kidney mass QTL 21 | 3.3 | | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 10 | 15028513 | 60430477 | Rat | n/a | region | qtl |
| 1000 | 2312418 | Kidm41 | Kidney mass QTL 41 | 3.7 | 0.0001 | kidney mass (VT:0002707) | single kidney wet weight to body weight ratio (CMO:0000622) | 12 | 1 | 19611090 | Rat | n/a | region | qtl |
| 1000 | 2312418 | Kidm41 | Kidney mass QTL 41 | 3.7 | 0.0001 | kidney mass (VT:0002707) | single kidney wet weight to body weight ratio (CMO:0000622) | 12 | 1 | 19611090 | Rat | n/a | region | qtl |
| 1000 | 10401803 | Kidm50 | Kidney mass QTL 50 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 10 | 418344 | 45418344 | Rat | n/a | region | qtl |
| 1000 | 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9658275 | 104670812 | Rat | n/a | region | qtl |
| 1000 | 1600371 | Mcs21 | Mammary carcinoma susceptibility QTL 21 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 28875650 | 52200160 | Rat | n/a | region | qtl |
| 1000 | 7243862 | Mcs30 | Mammary carcinoma susceptibility QTL 30 | 8.62 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 12 | 797729 | 8525593 | Rat | n/a | region | qtl |
| 1000 | 7243862 | Mcs30 | Mammary carcinoma susceptibility QTL 30 | 8.62 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 12 | 797729 | 8525593 | Rat | n/a | region | qtl |
| 1000 | 2298544 | Neuinf9 | Neuroinflammation QTL 9 | 4.6 | | nervous system integrity trait (VT:0010566) | spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126) | 10 | 5801990 | 62146030 | Rat | n/a | region | qtl |
| 1000 | 61354 | Pia10 | Pristane induced arthritis QTL 10 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 737979 | Pia22 | Pristane induced arthritis QTL 22 | 53.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 1 | 44465750 | Rat | n/a | region | qtl |
| 1000 | 737979 | Pia22 | Pristane induced arthritis QTL 22 | 53.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 1 | 44465750 | Rat | n/a | region | qtl |
| 1000 | 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 12 | 1 | 44503507 | Rat | n/a | region | qtl |
| 1000 | 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 12 | 1 | 44503507 | Rat | n/a | region | qtl |
| 1000 | 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 22427500 | 90627625 | Rat | n/a | region | qtl |
| 1000 | 9590268 | Scort13 | Serum corticosterone level QTL 13 | 3.26 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 11474010 | 56474010 | Rat | n/a | region | qtl |
| 1000 | 9590310 | Scort19 | Serum corticosterone level QTL 19 | 6.3 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 11474010 | 56474010 | Rat | n/a | region | qtl |
| 1000 | 9590147 | Scort7 | Serum corticosterone level QTL 7 | 13.61 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 9590147 | Scort7 | Serum corticosterone level QTL 7 | 13.61 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 12 | 1 | 42110980 | Rat | n/a | region | qtl |
| 1000 | 1578761 | Stresp21 | Stress response QTL 21 | 3.3 | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 10 | 6375746 | 51375746 | Rat | n/a | region | qtl |
| 1000 | 8662860 | Vetf10 | Vascular elastic tissue fragility QTL 10 | | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 10 | 6154182 | 73453136 | Rat | n/a | region | qtl |