| 1000 | 2313399 | Anxrr28 | Anxiety related response QTL 28 | | | aggression-related behavior trait (VT:0015014) | tameness/aggressiveness composite score (CMO:0002136) | 6 | 101593607 | 138161926 | Rat | n/a | region | qtl |
| 1000 | 1331799 | Bp211 | Blood pressure QTL 211 | 3.66407 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 88019181 | 136741135 | Rat | n/a | region | qtl |
| 1000 | 1331725 | Bp212 | Blood pressure QTL 212 | 3.52475 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 99437079 | 125323237 | Rat | n/a | region | qtl |
| 1000 | 1331797 | Bp213 | Blood pressure QTL 213 | 3.291 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 114241077 | 147156653 | Rat | n/a | region | qtl |
| 1000 | 1641917 | Colcr5 | Colorectal carcinoma resistance QTL 5 | 3.18 | 0.0009 | intestine integrity trait (VT:0010554) | benign colorectal tumor number (CMO:0001795) | 6 | 98944780 | 143944780 | Rat | n/a | region | qtl |
| 1000 | 61329 | Eae9 | Experimental allergic encephalomyelitis QTL 9 | 3.7 | | body mass (VT:0001259) | change in body weight (CMO:0002045) | 6 | 84490437 | 129490437 | Rat | n/a | region | qtl |
| 1000 | 10054138 | Gmadr3 | Adrenal mass QTL 3 | 3.68 | 0.00045 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 6 | 90871046 | 135871046 | Rat | n/a | region | qtl |
| 1000 | 1298087 | Iddm18 | Insulin dependent diabetes mellitus QTL 18 | | 0.0001 | urine glucose amount (VT:0001758) | percentage of study population developing diabetes mellitus during a period of time (CMO:0001114) | 6 | 122236101 | 147156653 | Rat | n/a | region | qtl |
| 1000 | 2293088 | Iddm28 | Insulin dependent diabetes mellitus QTL 28 | 5.21 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 6 | 68767270 | 135411972 | Rat | n/a | region | qtl |
| 1000 | 2293085 | Iddm29 | Insulin dependent diabetes mellitus QTL 29 | 7.66 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 6 | 121444670 | 147156653 | Rat | n/a | region | qtl |
| 1000 | 71111 | Iddm8 | Insulin dependent diabetes mellitus QTL 8 | 1.9 | 0.002 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 6 | 110921244 | 147156653 | Rat | n/a | region | qtl |
| 1000 | 4145118 | Mcs26 | Mammary carcinoma susceptibility QTL 26 | | 0.0001 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 6 | 112483610 | 147156653 | Rat | n/a | region | qtl |
| 1000 | 737976 | Pia24 | Pristane induced arthritis QTL 24 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 6 | 118366855 | 147156653 | Rat | n/a | region | qtl |
| 1000 | 61414 | Pia3 | Pristane induced arthritis QTL 3 | 4.5 | | joint integrity trait (VT:0010548) | post-insult time to onset of experimental arthritis (CMO:0001450) | 6 | 100704576 | 136029228 | Rat | n/a | region | qtl |
| 1000 | 1581550 | Pur8 | Proteinuria QTL 8 | | | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 93560258 | 136550638 | Rat | n/a | region | qtl |
| 1000 | 1576302 | Schws4 | Schwannoma susceptibility QTL 4 | | 0.0078 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 78204640 | 123204640 | Rat | n/a | region | qtl |
| 1000 | 12801471 | Schws9 | Schwannoma susceptibility QTL 9 | | | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 101593607 | 146593607 | Rat | n/a | region | qtl |
| 1000 | 1358355 | Srcrt4 | Stress Responsive Cort QTL 4 | 6.39 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 106095977 | 147156653 | Rat | n/a | region | qtl |
| 1000 | 10054123 | Srcrt6 | Stress Responsive Cort QTL 6 | 2.5 | 0.0043 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 90871046 | 135871046 | Rat | n/a | region | qtl |
| 1000 | 724524 | Uae2 | Urinary albumin excretion QTL 2 | 2.7 | 0.0005 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 79198463 | 144254945 | Rat | n/a | region | qtl |
| 1000 | 1581563 | Uae33 | Urinary albumin excretion QTL 33 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 93560258 | 136550638 | Rat | n/a | region | qtl |
| 1000 | 724536 | Uae7 | Urinary albumin excretion QTL 7 | 3.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 6 | 93560258 | 136550638 | Rat | n/a | region | qtl |
| 1000 | 2303624 | Vencon5 | Ventilatory control QTL 5 | 4.45 | | respiration trait (VT:0001943) | minute ventilation (CMO:0000132) | 6 | 93778632 | 138778632 | Rat | n/a | region | qtl |