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| Relevance | RGD ID | Symbol | Name | LOD | P Value | Trait | Sub Trait | Chr | Start | Stop | Species | Annotations | Match | Type |
| 1000 | 1358885 | Bp251 | Blood pressure QTL 251 | 3.8 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 1 | 141509147 | Rat | n/a | region | qtl | |
| 1000 | 1358888 | Bp264 | Blood pressure QTL 264 | 4.43 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 5675975 | 141509147 | Rat | n/a | region | qtl | |
| 1000 | 2298542 | Neuinf11 | Neuroinflammation QTL 11 | 3.9 | nervous system integrity trait (VT:0010566) | spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126) | 3 | 35403199 | 97383526 | Rat | n/a | region | qtl | |
| 1000 | 2290452 | Scl56 | Serum cholesterol level QTL 56 | 2.26 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 3 | 36101403 | 81101403 | Rat | n/a | region | qtl | |
| 1000 | 1300169 | Bp177 | Blood pressure QTL 177 | 2.96 | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 3 | 36425116 | 81425116 | Rat | n/a | region | qtl | |
| 1000 | 1358905 | Hrtrt17 | Heart rate QTL 17 | 5.9 | 0.000014 | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 3 | 36721849 | 110333156 | Rat | n/a | region | qtl |
| 1000 | 631676 | Cm8 | Cardiac mass QTL 8 | 7.03 | 0.0001 | aorta mass (VT:0002845) | aorta weight (CMO:0000076) | 3 | 37363734 | 82363734 | Rat | n/a | region | qtl |
| 1000 | 4889966 | Bss95 | Bone structure and strength QTL 95 | 4.4 | tibia area (VT:1000281) | tibia-fibula cross-sectional area (CMO:0001718) | 3 | 37796919 | 82796919 | Rat | n/a | region | qtl | |
| 1000 | 2325840 | Bp345 | Blood pressure QTL 345 | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 3 | 38708931 | 83708931 | Rat | n/a | region | qtl | |
| 1000 | 1354604 | Bw36 | Body weight QTL 36 | 2.9 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 42158111 | 124558371 | Rat | n/a | region | qtl | |
| 1000 | 1354597 | Kidm13 | Kidney mass QTL 13 | 2.9 | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 3 | 42158111 | 124558371 | Rat | n/a | region | qtl | |
| 1000 | 631832 | Sach1 | Saccharin preference QTL 1 | 2.7 | 0.02 | consumption behavior trait (VT:0002069) | calculated saccharin drink intake volume (CMO:0001600) | 3 | 47904172 | 92904172 | Rat | n/a | region | qtl |
| 1000 | 8694196 | Abfw2 | Abdominal fat weight QTL 2 | 16.58 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 3 | 48657744 | 93657744 | Rat | n/a | region | qtl |
| 1000 | 8694386 | Bw159 | Body weight QTL 159 | 4.52 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 3 | 48657744 | 93657744 | Rat | n/a | region | qtl |
| 1000 | 8552950 | Pigfal12 | Plasma insulin-like growth factor 1 level QTL 12 | 7.3 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 3 | 48657744 | 93657744 | Rat | n/a | region | qtl | |
| 1000 | 9590136 | Scort3 | Serum corticosterone level QTL 3 | 23.37 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 3 | 48657744 | 93657744 | Rat | n/a | region | qtl |
| 1000 | 9590286 | Uminl1 | Urine mineral level QTL 1 | 3.5 | 0.001 | urine mineral amount (VT:0015086) | urine electrolyte level (CMO:0000593) | 3 | 48657744 | 93657744 | Rat | n/a | region | qtl |
| 1000 | 1354590 | Despr11 | Despair related QTL 11 | 0.000031 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 3 | 48876619 | 93876619 | Rat | n/a | region | qtl | |
| 1000 | 2303593 | Gluco46 | Glucose level QTL 46 | 3 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 3 | 48876619 | 93876619 | Rat | n/a | region | qtl | |
| 1000 | 737818 | Hcar12 | Hepatocarcinoma resistance QTL 12 | 2.6 | liver integrity trait (VT:0010547) | volume of individual liver tumorous lesion (CMO:0001078) | 3 | 49872657 | 138829559 | Rat | n/a | region | qtl | |
| 1000 | 61419 | Cia11 | Collagen induced arthritis QTL 11 | 5.6 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 3 | 50766145 | 95766145 | Rat | n/a | region | qtl | |
| 1000 | 1558650 | Cm48 | Cardiac mass QTL 48 | 4 | 0.0001 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 3 | 50766145 | 95766145 | Rat | n/a | region | qtl |
| 1000 | 631647 | Bp122 | Blood pressure QTL 122 | 6.2 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 3 | 51092561 | 96092561 | Rat | n/a | region | qtl | |
| 1000 | 61356 | Bp37 | Blood pressure QTL 37 | 3 | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 3 | 51092561 | 96092561 | Rat | n/a | region | qtl | |
| 1000 | 1300178 | Hrtrt4 | Heart rate QTL 4 | 3.74 | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 3 | 51490129 | 111359995 | Rat | n/a | region | qtl | |
| 1000 | 70216 | Cm14 | Cardiac mass QTL 14 | 2.1 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 3 | 51581665 | 184004958 | Rat | n/a | region | qtl | |
| 1000 | 1354589 | Bw31 | Body weight QTL 31 | 3.3 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 53651826 | 98651826 | Rat | n/a | region | qtl | |
| 1000 | 10450813 | Scl74 | Serum cholesterol level QTL 74 | 5.8 | 0.001 | blood LDL cholesterol amount (VT:0000181) | blood low density lipoprotein cholesterol level (CMO:0000053) | 3 | 58601291 | 71157804 | Rat | n/a | region | qtl |
| 1000 | 10450816 | Scl75 | Serum cholesterol level QTL 75 | 4.4 | 0.001 | blood LDL cholesterol amount (VT:0000181) | blood low density lipoprotein cholesterol level (CMO:0000053) | 3 | 58601291 | 71157804 | Rat | n/a | region | qtl |
| 1000 | 1358362 | Srcrt2 | Stress Responsive Cort QTL 2 | 2.78 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 3 | 58601291 | 153936591 | Rat | n/a | region | qtl | |
| 1000 | 10450852 | Stl33 | Serum triglyceride level QTL 33 | 3.4 | 0.05 | blood LDL triglyceride amount (VT:0010699) | blood lipoprotein triglyceride level (CMO:0002685) | 3 | 58601291 | 71157804 | Rat | n/a | region | qtl |
| 1000 | 738019 | Anxrr10 | Anxiety related response QTL 10 | 3.9 | exploratory behavior trait (VT:0010471) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 3 | 58925062 | 103925062 | Rat | n/a | region | qtl | |
| 1000 | 634317 | Bw117 | Body weight QTL 117 | 3.58 | abdominal fat pad mass (VT:1000711) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 3 | 59863663 | 73704481 | Rat | n/a | region | qtl | |
| 1000 | 1331777 | Bw24 | Body weight QTL 24 | 3.503 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 59863663 | 87321459 | Rat | n/a | region | qtl | |
| 1000 | 2302276 | Bw82 | Body weight QTL 82 | 4.32 | body mass (VT:0001259) | body weight (CMO:0000012) | 3 | 59863663 | 83358329 | Rat | n/a | region | qtl | |
| 1000 | 1331795 | Rf30 | Renal function QTL 30 | 3.708 | urine potassium amount (VT:0010539) | urine potassium level (CMO:0000128) | 3 | 59863663 | 87321459 | Rat | n/a | region | qtl | |
| 1000 | 2292591 | Esta4 | Estrogen-induced thymic atrophy QTL 4 | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 3 | 67641776 | 167835660 | Rat | n/a | region | qtl | ||
| 1000 | 2292613 | Ept16 | Estrogen-induced pituitary tumorigenesis QTL 16 | 8.3 | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 3 | 67641995 | 130815812 | Rat | n/a | region | qtl | |
| 1000 | 1358186 | Ept2 | Estrogen-induced pituitary tumorigenesis QTL 2 | 8.3 | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 3 | 67641995 | 130815812 | Rat | n/a | region | qtl | |
| 1000 | 631841 | Niddm39 | Non-insulin dependent diabetes mellitus QTL 39 | 3.36 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 3 | 70311536 | 115311536 | Rat | n/a | region | qtl | |
| 1000 | 724523 | Tsu1 | Thymus enlargement suppressive QTL 1 | 3.84 | thymus mass (VT:0004954) | thymus weight to body weight ratio (CMO:0000612) | 3 | 70845569 | 136091483 | Rat | n/a | region | qtl | |
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