| 1000 | 2293700 | Bmd27 | Bone mineral density QTL 27 | 6.6 | 0.0001 | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 1 | 210980612 | 255980612 | Rat | n/a | region | qtl |
| 1000 | 2293701 | Bmd34 | Bone mineral density QTL 34 | 8.3 | 0.0001 | femur strength trait (VT:0010010) | femoral neck ultimate force (CMO:0001703) | 1 | 210980612 | 255980612 | Rat | n/a | region | qtl |
| 1000 | 2300175 | Bmd40 | Bone mineral density QTL 40 | 15.4 | 0.0001 | femur mineral mass (VT:0010011) | bone mineral density (CMO:0001226) | 1 | 210980612 | 255980612 | Rat | n/a | region | qtl |
| 1000 | 1358898 | Bp255 | Blood pressure QTL 255 | 3.6 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 200449456 | 256003563 | Rat | n/a | region | qtl |
| 1000 | 61376 | Bp42 | Blood pressure QTL 42 | 23.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 207243873 | 252243873 | Rat | n/a | region | qtl |
| 1000 | 2293655 | Bss36 | Bone structure and strength QTL 36 | 10.66 | 0.0001 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 1 | 210980612 | 255980612 | Rat | n/a | region | qtl |
| 1000 | 2293694 | Bss38 | Bone structure and strength QTL 38 | 7.05 | 0.0001 | femur strength trait (VT:0010010) | femur stiffness (CMO:0001674) | 1 | 210980612 | 255980612 | Rat | n/a | region | qtl |
| 1000 | 2293674 | Bss39 | Bone structure and strength QTL 39 | 7.1 | 0.0001 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 1 | 210980612 | 255980612 | Rat | n/a | region | qtl |
| 1000 | 631843 | Bw116 | Body weight QTL 116 | 4.1 | 0.016 | abdominal adipose amount (VT:1000220) | abdominal fat pad weight (CMO:0000088) | 1 | 233480549 | 270108840 | Rat | n/a | region | qtl |
| 1000 | 152025235 | Bw194 | Body weight QTL 194 | 4.86 | | body mass (VT:0001259) | | 1 | 132966869 | 252856240 | Rat | n/a | region | qtl |
| 1000 | 1354661 | Bw33 | Body weight QTL 33 | 5.2 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 160573753 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1354610 | Bw34 | Body weight QTL 34 | 4.1 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 160573753 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1357335 | Bw39 | Body weight QTL 39 | 3.3 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 207243873 | 252243873 | Rat | n/a | region | qtl |
| 1000 | 1354624 | Cm35 | Cardiac mass QTL35 | 5.7 | | heart left ventricle mass (VT:0007031) | calculated heart weight (CMO:0000073) | 1 | 186658830 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1358292 | Cm37 | Cardiac mass QTL 37 | 6.2 | 8e-07 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 1 | 205674651 | 250674651 | Rat | n/a | region | qtl |
| 1000 | 631658 | Cm7 | Cardiac mass QTL 7 | 5.32 | 0.0001 | aorta mass (VT:0002845) | aorta weight (CMO:0000076) | 1 | 205674651 | 250674651 | Rat | n/a | region | qtl |
| 1000 | 61327 | Eae7 | Experimental allergic encephalomyelitis QTL 7 | 5.6 | | body mass (VT:0001259) | change in body weight (CMO:0002045) | 1 | 226175591 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 1600397 | Edcs4 | Endometrial carcinoma susceptibility QTL 4 | 2.2 | | uterus morphology trait (VT:0001120) | percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) | 1 | 176288899 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 8552891 | Epfw5 | Epididymal fat weight QTL 5 | 4.4 | | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 1 | 202543537 | 247543537 | Rat | n/a | region | qtl |
| 1000 | 2312564 | Glom18 | Glomerulus QTL 18 | 2.4 | 0.003 | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 1 | 194786607 | 262083703 | Rat | n/a | region | qtl |
| 1000 | 724552 | Glom2 | Glomerulus QTL 2 | 3.3 | 0.0001 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli directly contacting the kidney surface (CMO:0001001) | 1 | 232312773 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 2314011 | Gluco56 | Glucose level QTL 56 | | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 209203273 | 254203273 | Rat | n/a | region | qtl |
| 1000 | 2316896 | Gluco57 | Glucose level QTL 57 | 7.2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 238398865 | 255849249 | Rat | n/a | region | qtl |
| 1000 | 634321 | Hc1 | Hypercalciuria QTL 1 | 2.91 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 1 | 188241285 | 250779312 | Rat | n/a | region | qtl |
| 1000 | 1600363 | Hc6 | Hypercalciuria QTL 6 | 2.7 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 1 | 210980612 | 255980612 | Rat | n/a | region | qtl |
| 1000 | 1549837 | Hcar15 | Hepatocarcinoma resistance QTL 15 | | 0.05 | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 162548015 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 738032 | Hcas5 | Hepatocarcinoma susceptibility QTL 5 | 3.12 | | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 185857683 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 631669 | Iddm9 | Insulin dependent diabetes mellitus QTL 9 | 2.8 | 0.039 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 1 | 233349180 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 724538 | Kidm1 | Kidney mass QTL 1 | 3.2 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 1 | 223134011 | 262090599 | Rat | n/a | region | qtl |
| 1000 | 1354646 | Kidm18 | Kidney mass QTL 18 | 5.7 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 1 | 160573753 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1354652 | Kidm20 | Kidney mass QTL 20 | 4.3 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 1 | 186658830 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 1358916 | Kidm22 | Kidney mass QTL 22 | 3.32 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 1 | 212738576 | 257738576 | Rat | n/a | region | qtl |
| 1000 | 1578763 | Kidm29 | Kidney mass QTL 29 | 3.3 | 0.0001 | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 1 | 218829748 | 263829748 | Rat | n/a | region | qtl |
| 1000 | 2292218 | Kidm35 | Kidney mass QTL 35 | | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 1 | 208798288 | 253798288 | Rat | n/a | region | qtl |
| 1000 | 631536 | Lnnr2 | Liver neoplastic nodule remodeling QTL 2 | 2.9 | 0.0005 | liver integrity trait (VT:0010547) | liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705) | 1 | 243953669 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 1600374 | Mcs17 | Mammary carcinoma susceptibility QTL 17 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 1 | 207099883 | 252099883 | Rat | n/a | region | qtl |
| 1000 | 1598853 | Memor3 | Memory QTL 3 | 4.5 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 1 | 152919152 | 268496042 | Rat | n/a | region | qtl |
| 1000 | 61400 | Niddm1 | Non-insulin dependent diabetes mellitus QTL 1 | 11 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 228180243 | 255849249 | Rat | n/a | region | qtl |
| 1000 | 70211 | Niddm24 | Non-insulin dependent diabetes mellitus QTL 24 | 3.79 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 224633915 | 269633915 | Rat | n/a | region | qtl |
| 1000 | 61403 | Niddm4 | Non-insulin dependent diabetes mellitus QTL 4 | | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 1 | 201464383 | 246464383 | Rat | n/a | region | qtl |
| 1000 | 634313 | Niddm43 | Non-insulin dependent diabetes mellitus QTL 43 | | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 208479811 | 269633915 | Rat | n/a | region | qtl |
| 1000 | 734767 | Niddm57 | Non-insulin dependent diabetes mellitus QTL 57 | | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 233480549 | 270108840 | Rat | n/a | region | qtl |
| 1000 | 734769 | Niddm58 | Non-insulin dependent diabetes mellitus QTL 58 | | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 225108840 | 270108840 | Rat | n/a | region | qtl |
| 1000 | 1600388 | Niddm67 | Non-insulin dependent diabetes mellitus QTL 67 | 5.84 | 0.000004 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 205233991 | 267096252 | Rat | n/a | region | qtl |
| 1000 | 1600396 | Niddm68 | Non-insulin dependent diabetes mellitus QTL 68 | 4.97 | 0.0003 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 205233991 | 267096252 | Rat | n/a | region | qtl |
| 1000 | 1600395 | Niddm69 | Non-insulin dependent diabetes mellitus QTL 69 | 4.14 | 0.0002 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 1 | 205233991 | 267096252 | Rat | n/a | region | qtl |
| 1000 | 61455 | Niddm7 | Non-insulin dependent diabetes mellitus QTL 7 | 5.5 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 1 | 223964326 | 248681945 | Rat | n/a | region | qtl |
| 1000 | 2302040 | Pia35 | Pristane induced arthritis QTL 35 | 3.8 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 1 | 226175591 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 1578778 | Pur4 | Proteinuria QTL 4 | 3.3 | 0.003 | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 1 | 160111531 | 262090437 | Rat | n/a | region | qtl |
| 1000 | 724533 | Rf51 | Renal function QTL 51 | 5.3 | 0.0002 | kidney plasma flow trait (VT:0005524) | renal plasma flow (CMO:0001914) | 1 | 228180370 | 266453608 | Rat | n/a | region | qtl |
| 1000 | 1581544 | Rf52 | Renal function QTL 52 | | 0.05 | urine total protein amount (VT:0000032) | urine protein excretion rate to body weight ratio (CMO:0001099) | 1 | 241569529 | 269633915 | Rat | n/a | region | qtl |
| 1000 | 1598821 | Rf55 | Renal function QTL 55 | 6.3 | | renal blood flow trait (VT:2000006) | ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239) | 1 | 228174566 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 1300108 | Rf8 | Renal function QTL 8 | 3.75 | | renal blood flow trait (VT:2000006) | absolute change in renal vascular resistance (CMO:0001900) | 1 | 237995023 | 269633915 | Rat | n/a | region | qtl |
| 1000 | 1354580 | Scort1 | Serum corticosterone level QTL 1 | 3.4 | | blood corticosterone amount (VT:0005345) | blood corticosterone level (CMO:0001172) | 1 | 154961463 | 266453731 | Rat | n/a | region | qtl |
| 1000 | 631215 | Stl8 | Serum triglyceride level QTL 8 | 9.27 | 0.0001 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 1 | 234540191 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 1641926 | Teswt2 | Testicular weight QTL 2 | 2.82 | | testis mass (VT:1000644) | both testes wet weight (CMO:0000175) | 1 | 203675682 | 248675682 | Rat | n/a | region | qtl |
| 1000 | 1298084 | Thym4 | Thymus enlargement QTL 4 | 10.68 | | thymus mass (VT:0004954) | thymus weight to body weight ratio (CMO:0000612) | 1 | 207243873 | 252243873 | Rat | n/a | region | qtl |
| 1000 | 731175 | Uae20 | Urinary albumin excretion QTL 20 | 3.5 | 0.0018 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 207163993 | 269633915 | Rat | n/a | region | qtl |
| 1000 | 1578759 | Uae30 | Urinary albumin excretion QTL 30 | 3.3 | 0.003 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 160111531 | 262090437 | Rat | n/a | region | qtl |
| 1000 | 7387289 | Uae45 | Urinary albumin excretion QTL 45 | 2.86 | 0.0021 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 233204160 | 270518180 | Rat | n/a | region | qtl |
| 1000 | 7394701 | Uae46 | Urinary albumin excretion QTL 46 | 3.6 | 0.0056 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 210980612 | 255980612 | Rat | n/a | region | qtl |
| 1000 | 724531 | Uae5 | Urinary albumin excretion QTL 5 | 4 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 1 | 160111426 | 262090599 | Rat | n/a | region | qtl |