| 1000 | 8694366 | Abfw8 | Abdominal fat weight QTL 8 | 6.38 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 18 | 46640675 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 1598826 | Anxrr20 | Anxiety related response QTL 20 | 3.04 | | body movement coordination trait (VT:0005424) | number of rearing movements in an experimental apparatus (CMO:0001752) | 18 | 41432971 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 2313399 | Anxrr28 | Anxiety related response QTL 28 | | | aggression-related behavior trait (VT:0015014) | tameness/aggressiveness composite score (CMO:0002136) | 6 | 100671796 | 132340886 | Rat | n/a | region | qtl |
| 1000 | 738034 | Anxrr5 | Anxiety related response QTL 5 | 5.9 | | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 6 | 84130881 | 129130881 | Rat | n/a | region | qtl |
| 1000 | 1331799 | Bp211 | Blood pressure QTL 211 | 3.66407 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 72202632 | 130919985 | Rat | n/a | region | qtl |
| 1000 | 1331725 | Bp212 | Blood pressure QTL 212 | 3.52475 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 93701310 | 128713626 | Rat | n/a | region | qtl |
| 1000 | 1331797 | Bp213 | Blood pressure QTL 213 | 3.291 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 6 | 104085867 | 128713626 | Rat | n/a | region | qtl |
| 1000 | 1331741 | Bp232 | Blood pressure QTL 232 | 3.59112 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 18 | 21372893 | 83213037 | Rat | n/a | region | qtl |
| 1000 | 1331733 | Bp233 | Blood pressure QTL 233 | 3.97196 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 18 | 24796977 | 79788953 | Rat | n/a | region | qtl |
| 1000 | 2301969 | Bp324 | Blood pressure QTL 324 | 4.05 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 18 | 59712417 | 76477814 | Rat | n/a | region | qtl |
| 1000 | 6903353 | Bp353 | Blood pressure QTL 353 | 2.8 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 18 | 59796478 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 6903356 | Bp354 | Blood pressure QTL 354 | 4.6 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 18 | 59796478 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 61384 | Bp48 | Blood pressure QTL 48 | 19.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 18 | 60622311 | 77209844 | Rat | n/a | region | qtl |
| 1000 | 70185 | BpQTLcluster15 | Blood pressure QTL cluster 15 | 4.61 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 18 | 59712417 | 76477814 | Rat | n/a | region | qtl |
| 1000 | 70185 | BpQTLcluster15 | Blood pressure QTL cluster 15 | 4.61 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 18 | 59712417 | 76477814 | Rat | n/a | region | qtl |
| 1000 | 70185 | BpQTLcluster15 | Blood pressure QTL cluster 15 | 4.61 | | arterial blood pressure trait (VT:2000000) | absolute change in mean arterial blood pressure (CMO:0000533) | 18 | 59712417 | 76477814 | Rat | n/a | region | qtl |
| 1000 | 70185 | BpQTLcluster15 | Blood pressure QTL cluster 15 | 4.61 | | arterial blood pressure trait (VT:2000000) | absolute change in systolic blood pressure (CMO:0000607) | 18 | 59712417 | 76477814 | Rat | n/a | region | qtl |
| 1000 | 1578661 | Bss20 | Bone structure and strength QTL 20 | 3.7 | | femur morphology trait (VT:0000559) | femoral neck cross-sectional area (CMO:0001697) | 18 | 11791518 | 83218561 | Rat | n/a | region | qtl |
| 1000 | 1578667 | Bss21 | Bone structure and strength QTL 21 | 3.5 | | femur morphology trait (VT:0000559) | femoral neck cortical cross-sectional area (CMO:0001702) | 18 | 11791518 | 83218561 | Rat | n/a | region | qtl |
| 1000 | 631518 | Bw11 | Body weight QTL 11 | 2.8 | | body mass (VT:0001259) | body weight (CMO:0000012) | 18 | 35870723 | 80870723 | Rat | n/a | region | qtl |
| 1000 | 6893683 | Bw110 | Body weight QTL 110 | 2.7 | 0.002 | body mass (VT:0001259) | body weight (CMO:0000012) | 18 | 43345022 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 8694432 | Bw165 | Body weight QTL 165 | 3.81 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 18 | 46640675 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 2303571 | Bw92 | Body weight QTL 92 | 3 | | body mass (VT:0001259) | body weight (CMO:0000012) | 18 | 48520044 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 1298072 | Cia26 | Collagen induced arthritis QTL 26 | 3.6 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 18 | 54709769 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 70172 | Eae15 | Experimental allergic encephalomyelitis QTL 15 | | 0.001 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) | 18 | 76477814 | 77209844 | Rat | n/a | region | qtl |
| 1000 | 9589041 | Epfw12 | Epididymal fat weight QTL 12 | 17.08 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 18 | 46640675 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 1300076 | Glom8 | Glomerulus QTL 8 | 7 | 0.000000009 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli directly contacting the kidney surface (CMO:0001001) | 6 | 86894788 | 131894788 | Rat | n/a | region | qtl |
| 1000 | 2303584 | Gluco55 | Glucose level QTL 55 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 18 | 48520044 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 10054138 | Gmadr3 | Adrenal mass QTL 3 | 3.68 | 0.00045 | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 6 | 85140138 | 130140138 | Rat | n/a | region | qtl |
| 1000 | 738008 | Hcar14 | Hepatocarcinoma resistance QTL 14 | 4.3 | | liver integrity trait (VT:0010547) | liver nonremodeling tumorous lesion number (CMO:0001462) | 18 | 51464733 | 83218561 | Rat | n/a | region | qtl |
| 1000 | 631675 | Iddm15 | Insulin dependent diabetes mellitus QTL 15 | | | urine glucose amount (VT:0001758) | percentage of study population developing diabetes mellitus during a period of time (CMO:0001114) | 18 | 60622311 | 77209844 | Rat | n/a | region | qtl |
| 1000 | 1298087 | Iddm18 | Insulin dependent diabetes mellitus QTL 18 | | 0.0001 | urine glucose amount (VT:0001758) | percentage of study population developing diabetes mellitus during a period of time (CMO:0001114) | 6 | 116506292 | 130245370 | Rat | n/a | region | qtl |
| 1000 | 61367 | Iddm4 | Insulin dependent diabetes mellitus QTL 4 | 2.33 | 0.0074 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 18 | 38192455 | 83192455 | Rat | n/a | region | qtl |
| 1000 | 71111 | Iddm8 | Insulin dependent diabetes mellitus QTL 8 | 1.9 | 0.002 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 6 | 105156861 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 724542 | Kidm2 | Kidney mass QTL 2 | 2.6 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 18 | 59172115 | 83828827 | Rat | n/a | region | qtl |
| 1000 | 1600373 | Mamtr6 | Mammary tumor resistance QTL 6 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 18 | 19278901 | 83218561 | Rat | n/a | region | qtl |
| 1000 | 2303120 | Mamtr8 | Mammary tumor resistance QTL 8 | | 0.001 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 18 | 31359408 | 83218561 | Rat | n/a | region | qtl |
| 1000 | 4145118 | Mcs26 | Mammary carcinoma susceptibility QTL 26 | | 0.0001 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 6 | 106752656 | 132339866 | Rat | n/a | region | qtl |
| 1000 | 634333 | Pia19 | Pristane induced arthritis QTL 19 | 3.4 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 18 | 73997140 | 79532029 | Rat | n/a | region | qtl |
| 1000 | 737976 | Pia24 | Pristane induced arthritis QTL 24 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 6 | 112636280 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 61414 | Pia3 | Pristane induced arthritis QTL 3 | 4.5 | | joint integrity trait (VT:0010548) | post-insult time to onset of experimental arthritis (CMO:0001450) | 6 | 94968928 | 137848904 | Rat | n/a | region | qtl |
| 1000 | 1581550 | Pur8 | Proteinuria QTL 8 | | | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 6 | 72227641 | 130729205 | Rat | n/a | region | qtl |
| 1000 | 12801411 | Schws8 | Schwannoma susceptibility QTL 8 | | | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 6 | 94968928 | 139968928 | Rat | n/a | region | qtl |
| 1000 | 631274 | Sprol1 | Serum protein level QTL 1 | 5.3 | | blood total protein amount (VT:0005567) | serum total protein level (CMO:0000661) | 18 | 31393320 | 77209694 | Rat | n/a | region | qtl |
| 1000 | 1358355 | Srcrt4 | Stress Responsive Cort QTL 4 | 6.39 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 100364669 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 10054123 | Srcrt6 | Stress Responsive Cort QTL 6 | 2.5 | 0.0043 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 6 | 85140138 | 130140138 | Rat | n/a | region | qtl |
| 1000 | 724513 | Uae14 | Urinary albumin excretion QTL 14 | 6.5 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 85311061 | 133478515 | Rat | n/a | region | qtl |
| 1000 | 731173 | Uae22 | Urinary albumin excretion QTL 22 | 10.1 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 65531555 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 1581563 | Uae33 | Urinary albumin excretion QTL 33 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 72227641 | 130729205 | Rat | n/a | region | qtl |
| 1000 | 2290393 | Uae37 | Urinary albumin excretion QTL 37 | | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 6 | 65531555 | 140994061 | Rat | n/a | region | qtl |
| 1000 | 724536 | Uae7 | Urinary albumin excretion QTL 7 | 3.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 6 | 72202632 | 130729475 | Rat | n/a | region | qtl |
| 1000 | 2303624 | Vencon5 | Ventilatory control QTL 5 | 4.45 | | respiration trait (VT:0001943) | minute ventilation (CMO:0000132) | 6 | 88047916 | 133047916 | Rat | n/a | region | qtl |
| 1000 | 8552796 | Vie3 | Viral induced encephalitis QTL 3 | 2.6 | | brain integrity trait (VT:0010579) | encephalitis incidence/prevalence measurement (CMO:0002361) | 6 | 96833997 | 140994061 | Rat | n/a | region | qtl |