| 1000 | 2317054 | Aia12 | Adjuvant induced arthritis QTL 12 | 4.24 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 17 | 38281509 | 83281509 | Rat | n/a | region | qtl |
| 1000 | 2317035 | Aia16 | Adjuvant induced arthritis QTL 16 | 2.71 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 7 | 59238038 | 104238038 | Rat | n/a | region | qtl |
| 1000 | 2317052 | Aia17 | Adjuvant induced arthritis QTL 17 | 2.13 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 7 | 81737938 | 126737938 | Rat | n/a | region | qtl |
| 1000 | 2317053 | Aia25 | Adjuvant induced arthritis QTL 25 | 2.69 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 17 | 50909196 | 60781426 | Rat | n/a | region | qtl |
| 1000 | 2317060 | Aia26 | Adjuvant induced arthritis QTL 26 | 3.22 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 17 | 38281509 | 83281509 | Rat | n/a | region | qtl |
| 1000 | 12903981 | Am17 | Aortic mass QTL 17 | | 0.001 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 634336 | Anxrr17 | Anxiety related response QTL 17 | 3.66 | | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 7 | 924703 | 115097879 | Rat | n/a | region | qtl |
| 1000 | 1358295 | Aocep1 | Aortic cell protein QTL 1 | 6.1 | 0.00000071 | thoracic aorta cellular protein amount (VT:0010598) | aortic cell percentage | 17 | 40990005 | 85990005 | Rat | n/a | region | qtl |
| 1000 | 2313102 | Bmd79 | Bone mineral density QTL 79 | 2.3 | 0.0001 | tibia mineral mass (VT:1000283) | total volumetric bone mineral density (CMO:0001728) | 7 | 94811085 | 116738842 | Rat | n/a | region | qtl |
| 1000 | 1298528 | Bp169 | Blood pressure QTL 169 | | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 61074194 | 106074194 | Rat | n/a | region | qtl |
| 1000 | 1300151 | Bp181 | Blood pressure QTL 181 | 3.36 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 7 | 53612714 | 103945643 | Rat | n/a | region | qtl |
| 1000 | 1300148 | Bp192 | Blood pressure QTL 192 | 3.47 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 17 | 34550843 | 73951021 | Rat | n/a | region | qtl |
| 1000 | 1331728 | Bp214 | Blood pressure QTL 214 | 2.825 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 80221299 | 124373579 | Rat | n/a | region | qtl |
| 1000 | 1354619 | Bp242 | Blood pressure QTL 242 | 6.3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 17 | 24599340 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1354635 | Bp245 | Blood pressure QTL 245 | 6 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 17 | 42073160 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1354635 | Bp245 | Blood pressure QTL 245 | 6 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 42073160 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1354581 | Bp247 | Blood pressure QTL 247 | 4.5 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 17 | 1 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1358891 | Bp265 | Blood pressure QTL 265 | 2.21 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 83591953 | 134666232 | Rat | n/a | region | qtl |
| 1000 | 1358914 | Bp266 | Blood pressure QTL 266 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 7 | 83591953 | 134666232 | Rat | n/a | region | qtl |
| 1000 | 1559055 | Bp278 | Blood pressure QTL 278 | | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 61357 | Bp38 | Blood pressure QTL 38 | 1.6 | 0.052 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 7 | 41333674 | 119109060 | Rat | n/a | region | qtl |
| 1000 | 10450503 | Bp386 | Blood pressure QTL 386 | | 0.28 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 31368391 | 62109574 | Rat | n/a | region | qtl |
| 1000 | 61394 | Bp8 | Blood pressure QTL 8 | 2.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 17 | 23080567 | 59555013 | Rat | n/a | region | qtl |
| 1000 | 631497 | Bp98 | Blood pressure QTL 98 | 3.66 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 17 | 41354651 | 60463643 | Rat | n/a | region | qtl |
| 1000 | 4889955 | Bss93 | Bone structure and strength QTL 93 | 4.4 | | tibia size trait (VT:0100001) | tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727) | 17 | 27027949 | 60463643 | Rat | n/a | region | qtl |
| 1000 | 1354588 | Bvd4 | Brain ventricular dilatation QTL 4 | 5.31 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 17 | 53498828 | 82479847 | Rat | n/a | region | qtl |
| 1000 | 1354663 | Bvd5 | Brain ventricular dilatation QTL 5 | 3.51 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 17 | 31990784 | 81292925 | Rat | n/a | region | qtl |
| 1000 | 634322 | Bw12 | Body weight QTL 12 | 0 | | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 83153392 | 128153392 | Rat | n/a | region | qtl |
| 1000 | 7411575 | Bw140 | Body weight QTL 140 | 30.2 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 17 | 48560935 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 8694181 | Bw151 | Body weight QTL 151 | 4.36 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 17 | 48560935 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 61397 | Bw17 | Body weight QTL 17 | 6.3 | | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 93595647 | 106839474 | Rat | n/a | region | qtl |
| 1000 | 1354596 | Bw32 | Body weight QTL 32 | 4.5 | | body mass (VT:0001259) | body weight (CMO:0000012) | 17 | 4299130 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 631540 | Bw9 | Body weight QTL 9 | 4.5 | | body mass (VT:0001259) | body weight (CMO:0000012) | 7 | 69736226 | 117455174 | Rat | n/a | region | qtl |
| 1000 | 12903978 | Cm118 | Cardiac mass QTL 118 | | 0.001 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 12903979 | Cm119 | Cardiac mass QTL 119 | | 0.001 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 12903980 | Cm120 | Cardiac mass QTL 120 | | 0.002 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 17 | 23653184 | 68653184 | Rat | n/a | region | qtl |
| 1000 | 70210 | Cm15 | Cardiac mass QTL 15 | 6.5 | | heart right ventricle mass (VT:0007033) | heart right ventricle wet weight (CMO:0000072) | 17 | 57246723 | 70156904 | Rat | n/a | region | qtl |
| 1000 | 631504 | Cm27 | Cardiac mass QTL 27 | 3.45 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 7 | 44421311 | 118198041 | Rat | n/a | region | qtl |
| 1000 | 1354630 | Cm34 | Cardiac mass QTL 34 | 8.7 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1300149 | Cm6 | Cardiac mass QTL 6 | 4.09 | | heart mass (VT:0007028) | heart left ventricle weight to body weight ratio (CMO:0000530) | 7 | 43747099 | 102228765 | Rat | n/a | region | qtl |
| 1000 | 2324621 | Coatc5 | Coat color QTL 5 | | | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 17 | 31368391 | 73951021 | Rat | n/a | region | qtl |
| 1000 | 4889894 | Eae33 | Experimental allergic encephalomyelitis QTL 33 | 5.2 | 0.0001 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 17 | 50909099 | 86022412 | Rat | n/a | region | qtl |
| 1000 | 2298475 | Eau6 | Experimental allergic uveoretinitis QTL 6 | | 0.0029 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 7 | 84257275 | 129257275 | Rat | n/a | region | qtl |
| 1000 | 1600398 | Edcs5 | Endometrial carcinoma susceptibility QTL 5 | 2.2 | | uterus morphology trait (VT:0001120) | percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) | 17 | 57246723 | 70852846 | Rat | n/a | region | qtl |
| 1000 | 1559283 | Emca4 | Estrogen-induced mammary cancer QTL 4 | 3.7 | | mammary gland integrity trait (VT:0010552) | percentage of study population developing mammary tumors during a period of time (CMO:0000948) | 7 | 62004452 | 101773158 | Rat | n/a | region | qtl |
| 1000 | 1576303 | Ept7 | Estrogen-induced pituitary tumorigenesis QTL 7 | 3.7 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 7 | 62004452 | 101773158 | Rat | n/a | region | qtl |
| 1000 | 7411607 | Foco15 | Food consumption QTL 15 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 7 | 75918751 | 120918751 | Rat | n/a | region | qtl |
| 1000 | 7411654 | Foco25 | Food consumption QTL 25 | 9.3 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 7 | 75918751 | 120918751 | Rat | n/a | region | qtl |
| 1000 | 2317038 | Ginf3 | Gastrointestinal inflammation QTL 3 | 2.89 | 0.005 | liver integrity trait (VT:0010547) | liver granuloma severity score (CMO:0002157) | 17 | 49920154 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 731176 | Glom5 | Glomerulus QTL 5 | 2.5 | 0.0035 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) | 7 | 96670164 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 2302365 | Gluco40 | Glucose level QTL 40 | 4.79 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 17 | 57246843 | 82046127 | Rat | n/a | region | qtl |
| 1000 | 2303580 | Gluco49 | Glucose level QTL 49 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 17 | 50040271 | 86533673 | Rat | n/a | region | qtl |
| 1000 | 1357336 | Gluco6 | Glucose level QTL 6 | 3.4 | | blood glucose amount (VT:0000188) | serum glucose level (CMO:0000543) | 7 | 94811326 | 116294265 | Rat | n/a | region | qtl |
| 1000 | 631687 | Hcas1 | Hepatocarcinoma susceptibility QTL 1 | 3.9 | 0.001 | liver integrity trait (VT:0010547) | liver tumorous lesion volume to total liver volume ratio (CMO:0001082) | 7 | 91412594 | 129807172 | Rat | n/a | region | qtl |
| 1000 | 2299163 | Iddm34 | Insulin dependent diabetes mellitus QTL 34 | 2.71 | | blood glucose amount (VT:0000188) | age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140) | 7 | 91281130 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 1354638 | Insul1 | Insulin level QTL 1 | 4.8 | | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 1331768 | Kidm10 | Kidney mass QTL 10 | 4.62096 | | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 7 | 80221299 | 125221299 | Rat | n/a | region | qtl |
| 1000 | 2301412 | Kidm40 | Kidney mass QTL 40 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 17 | 37479847 | 82479847 | Rat | n/a | region | qtl |
| 1000 | 1300179 | Kidm5 | Kidney mass QTL 5 | 3.51 | | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 7 | 43747012 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 12903982 | Kidm70 | Kidney mass QTL 70 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 17 | 23653184 | 70974005 | Rat | n/a | region | qtl |
| 1000 | 1331746 | Kidm9 | Kidney mass QTL 9 | 3.934 | | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 7 | 80221299 | 112308525 | Rat | n/a | region | qtl |
| 1000 | 1354651 | Lmblg2 | Limb length QTL 2 | 6 | | tibia length (VT:0004357) | tibia length (CMO:0000450) | 17 | 4299130 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 7394837 | Memor18 | Memory QTL 18 | | | exploratory behavior trait (VT:0010471) | measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957) | 17 | 18640182 | 63640182 | Rat | n/a | region | qtl |
| 1000 | 1598871 | Memor5 | Memory QTL 5 | 5.3 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 17 | 40540041 | 80387013 | Rat | n/a | region | qtl |
| 1000 | 61466 | Niddm12 | Non-insulin dependent diabetes mellitus QTL 12 | 3.2 | 0.001 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 17 | 54029929 | 60463637 | Rat | n/a | region | qtl |
| 1000 | 71114 | Niddm14 | Non-insulin dependent diabetes mellitus QTL 14 | 4.5 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 7 | 84257275 | 129257275 | Rat | n/a | region | qtl |
| 1000 | 70173 | Niddm19 | Non-insulin dependent diabetes mellitus QTL 19 | 4.33 | 0.00005 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 7 | 64002457 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 724549 | Niddm56 | Non-insulin dependent diabetes mellitus QTL 56 | | 0.03 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 17 | 31990784 | 76990784 | Rat | n/a | region | qtl |
| 1000 | 1643004 | Pain2 | Pain QTL 2 | 1 | | mechanical nociception trait (VT:0002734) | self mutilation severity score (CMO:0002145) | 7 | 9462246 | 98011544 | Rat | n/a | region | qtl |
| 1000 | 634331 | Pia17 | Pristane induced arthritis QTL 17 | 4.7 | | joint integrity trait (VT:0010548) | arthritic paw count (CMO:0001460) | 7 | 73829340 | 130221005 | Rat | n/a | region | qtl |
| 1000 | 8552928 | Pigfal9 | Plasma insulin-like growth factor 1 level QTL 9 | 9 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 17 | 28409147 | 73409147 | Rat | n/a | region | qtl |
| 1000 | 2316952 | Pur22 | Proteinuria QTL 22 | 5.2 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 7 | 68938720 | 113886318 | Rat | n/a | region | qtl |
| 1000 | 1354662 | Rf49 | Renal function QTL 49 | 2.9 | | blood creatinine amount (VT:0005328) | plasma creatinine level (CMO:0000537) | 17 | 1 | 69599340 | Rat | n/a | region | qtl |
| 1000 | 2316947 | Rf58 | Renal function QTL 58 | 7.8 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 7 | 68938720 | 113886318 | Rat | n/a | region | qtl |
| 1000 | 1354629 | Scl31 | Serum cholesterol level QTL 31 | 4.1 | | blood cholesterol amount (VT:0000180) | blood total cholesterol level (CMO:0000051) | 17 | 50890908 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1354640 | Scl32 | Serum cholesterol level QTL 32 | 5.4 | | blood HDL cholesterol amount (VT:0000184) | blood high density lipoprotein cholesterol level (CMO:0000052) | 17 | 15781592 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1354659 | Scl68 | Serum cholesterol level QTL 68 | 3.9 | | blood VLDL cholesterol amount (VT:0005144) | blood very low density lipoprotein cholesterol level (CMO:0000648) | 17 | 15781592 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 10450828 | Scl79 | Serum cholesterol level QTL 79 | 3.5 | 0.001 | blood HDL cholesterol amount (VT:0000184) | blood low density lipoprotein cholesterol level (CMO:0000053) | 7 | 89867376 | 101773158 | Rat | n/a | region | qtl |
| 1000 | 9590107 | Sffal7 | Serum free fatty acids level QTL 7 | 4.81 | 0.001 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 17 | 28409147 | 73409147 | Rat | n/a | region | qtl |
| 1000 | 1354654 | Spl7 | Serum phospholipid level QTL 7 | 5.5 | | blood phospholipid amount (VT:0006084) | blood phospholipid level (CMO:0001169) | 17 | 50890908 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1354658 | Spl8 | Serum phospholipid level QTL 8 | 3.8 | | blood VLDL phospholipid amount (VT:0010507) | blood very low density lipoprotein phospholipid level (CMO:0001571) | 17 | 1 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1358361 | Sradr5 | Stress Responsive Adrenal Weight QTL 5 | 5.55 | | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 7 | 43747012 | 108555253 | Rat | n/a | region | qtl |
| 1000 | 1354628 | Stl13 | Serum triglyceride level QTL 13 | 3.8 | | blood triglyceride amount (VT:0002644) | blood triglyceride level (CMO:0000118) | 17 | 21293039 | 60781592 | Rat | n/a | region | qtl |
| 1000 | 1357338 | Stl17 | Serum triglyceride level QTL 17 | 3.23 | | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 7 | 69736356 | 112729554 | Rat | n/a | region | qtl |
| 1000 | 2316955 | Stl24 | Serum triglyceride level QTL 24 | 7.1 | | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 7 | 68938720 | 113886318 | Rat | n/a | region | qtl |
| 1000 | 1549899 | Stresp8 | Stress response QTL 8 | 4.37 | 0.0008 | stress-related behavior trait (VT:0010451) | defensive burying duration (CMO:0001961) | 7 | 90482196 | 135012528 | Rat | n/a | region | qtl |
| 1000 | 1558655 | Swd4 | Spike wave discharge measurement QTL 4 | 3.68 | 0.0002 | brain electrophysiology trait (VT:0010557) | brain spike-and-wave discharge severity grade (CMO:0001988) | 7 | 86983365 | 131983365 | Rat | n/a | region | qtl |
| 1000 | 631529 | Tls2 | T-lymphoma susceptibility QTL 2 | 0 | 0.001 | thymus integrity trait (VT:0010555) | percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911) | 7 | 80221299 | 109401111 | Rat | n/a | region | qtl |
| 1000 | 724528 | Uae4 | Urinary albumin excretion QTL 4 | 4.9 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 17 | 35837085 | 69599340 | Rat | n/a | region | qtl |