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| Relevance | RGD ID | Symbol | Name | LOD | P Value | Trait | Sub Trait | Chr | Start | Stop | Species | Annotations | Match | Type |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 1 | 42323132 | 87323132 | Rat | n/a | region | qtl | |
| 1000 | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 2138965 | 166875058 | Rat | n/a | region | qtl | ||
| 1000 | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 2138965 | 166875058 | Rat | n/a | region | qtl | ||
| 1000 | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 40128307 | 148607290 | Rat | n/a | region | qtl | |
| 1000 | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 40128307 | 148607290 | Rat | n/a | region | qtl | |
| 1000 | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 46711509 | 161317411 | Rat | n/a | region | qtl | |
| 1000 | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 46711509 | 161317411 | Rat | n/a | region | qtl | |
| 1000 | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 59793399 | 143070159 | Rat | n/a | region | qtl |
| 1000 | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 59793399 | 143070159 | Rat | n/a | region | qtl |
| 1000 | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 60293434 | 161481680 | Rat | n/a | region | qtl |
| 1000 | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 60293434 | 161481680 | Rat | n/a | region | qtl |
| 1000 | 1354598 | Srn6 | Serum renin concentration QTL 6 | 3.8 | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 5 | 69540295 | 151018848 | Rat | n/a | region | qtl | |
| 1000 | 1354598 | Srn6 | Serum renin concentration QTL 6 | 3.8 | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 5 | 69540295 | 151018848 | Rat | n/a | region | qtl | |
| 1000 | 1302790 | Scl20 | Serum cholesterol level QTL 20 | 6.4 | 0.0001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 82394392 | 166664054 | Rat | n/a | region | qtl |
| 1000 | 1302790 | Scl20 | Serum cholesterol level QTL 20 | 6.4 | 0.0001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 82394392 | 166664054 | Rat | n/a | region | qtl |
| 1000 | 61452 | Ciaa5 | CIA Autoantibody QTL 5 | 3.5 | blood autoantibody amount (VT:0003725) | calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) | 5 | 94858972 | 143070159 | Rat | n/a | region | qtl | |
| 1000 | 61452 | Ciaa5 | CIA Autoantibody QTL 5 | 3.5 | blood autoantibody amount (VT:0003725) | calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) | 5 | 94858972 | 143070159 | Rat | n/a | region | qtl | |
| 1000 | 1331796 | Thshl2 | Thyroid stimulating hormone level QTL 2 | 2.3 | blood thyroid-stimulating hormone amount (VT:0005119) | serum thyroid stimulating hormone level (CMO:0001248) | 5 | 97059760 | 147465714 | Rat | n/a | region | qtl | |
| 1000 | 1331796 | Thshl2 | Thyroid stimulating hormone level QTL 2 | 2.3 | blood thyroid-stimulating hormone amount (VT:0005119) | serum thyroid stimulating hormone level (CMO:0001248) | 5 | 97059760 | 147465714 | Rat | n/a | region | qtl | |
| 1000 | 1358187 | Emca1 | Estrogen-induced mammary cancer QTL 1 | 4.4 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 5 | 99216724 | 148607142 | Rat | n/a | region | qtl | |
| 1000 | 1358187 | Emca1 | Estrogen-induced mammary cancer QTL 1 | 4.4 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 5 | 99216724 | 148607142 | Rat | n/a | region | qtl | |
| 1000 | 1578673 | Bmd13 | Bone mineral density QTL 13 | 4.9 | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 5 | 103689353 | 148689353 | Rat | n/a | region | qtl | |
| 1000 | 1578673 | Bmd13 | Bone mineral density QTL 13 | 4.9 | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 5 | 103689353 | 148689353 | Rat | n/a | region | qtl | |
| 1000 | 2317056 | Wbc3 | White blood cell count QTL 3 | 2.51 | 0.01 | leukocyte quantity (VT:0000217) | white blood cell count (CMO:0000027) | 5 | 105999803 | 150999803 | Rat | n/a | region | qtl |
| 1000 | 2317056 | Wbc3 | White blood cell count QTL 3 | 2.51 | 0.01 | leukocyte quantity (VT:0000217) | white blood cell count (CMO:0000027) | 5 | 105999803 | 150999803 | Rat | n/a | region | qtl |
| 1000 | 7207481 | Bss106 | Bone structure and strength QTL 106 | 7.9 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207481 | Bss106 | Bone structure and strength QTL 106 | 7.9 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207486 | Bss109 | Bone structure and strength QTL 109 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | ||
| 1000 | 7207486 | Bss109 | Bone structure and strength QTL 109 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | ||
| 1000 | 7207488 | Bss110 | Bone structure and strength QTL 1 | 8.4 | femur strength trait (VT:0010010) | femur stiffness (CMO:0001674) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207488 | Bss110 | Bone structure and strength QTL 1 | 8.4 | femur strength trait (VT:0010010) | femur stiffness (CMO:0001674) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207491 | Bss112 | Bone structure and strength QTL 112 | 7 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 7207491 | Bss112 | Bone structure and strength QTL 112 | 7 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 1549838 | Bss4 | Bone structure and strength QTL 4 | 9.2 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 1549838 | Bss4 | Bone structure and strength QTL 4 | 9.2 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 5 | 106906205 | 151906205 | Rat | n/a | region | qtl | |
| 1000 | 1598847 | Cm62 | Cardiac mass QTL 62 | 3.4 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 108845856 | 153845856 | Rat | n/a | region | qtl | |
| 1000 | 1598847 | Cm62 | Cardiac mass QTL 62 | 3.4 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 108845856 | 153845856 | Rat | n/a | region | qtl | |
| 1000 | 1298089 | Scl14 | Serum cholesterol level QTL 14 | 5.8 | 0.0004 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 108845856 | 153845856 | Rat | n/a | region | qtl |
| 1000 | 1298089 | Scl14 | Serum cholesterol level QTL 14 | 5.8 | 0.0004 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 108845856 | 153845856 | Rat | n/a | region | qtl |
| 1000 | 8657050 | Bw146 | Body weight QTL 146 | 19.84 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 108938288 | 153938288 | Rat | n/a | region | qtl |
| 1000 | 8657050 | Bw146 | Body weight QTL 146 | 19.84 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 108938288 | 153938288 | Rat | n/a | region | qtl |
| 1000 | 8694198 | Abfw3 | Abdominal fat weight QTL 3 | 16.13 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694198 | Abfw3 | Abdominal fat weight QTL 3 | 16.13 | 0.001 | visceral adipose mass (VT:0010063) | abdominal fat pad weight to body weight ratio (CMO:0000095) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694389 | Bw160 | Body weight QTL 160 | 6.17 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694389 | Bw160 | Body weight QTL 160 | 6.17 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694441 | Bw169 | Body weight QTL 169 | 17.61 | 0.001 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8694441 | Bw169 | Body weight QTL 169 | 17.61 | 0.001 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl |
| 1000 | 8552960 | Pigfal15 | Plasma insulin-like growth factor 1 level QTL 15 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl | ||
| 1000 | 8552960 | Pigfal15 | Plasma insulin-like growth factor 1 level QTL 15 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 111416838 | 156416838 | Rat | n/a | region | qtl | ||
| 1000 | 2293642 | Bss37 | Bone structure and strength QTL 37 | 4.64 | 0.0001 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 5 | 120740824 | 151018848 | Rat | n/a | region | qtl |
| 1000 | 2293642 | Bss37 | Bone structure and strength QTL 37 | 4.64 | 0.0001 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 5 | 120740824 | 151018848 | Rat | n/a | region | qtl |
| 1000 | 1581510 | Cm54 | Cardiac mass QTL 54 | 3.4 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 5 | 120740824 | 143608494 | Rat | n/a | region | qtl |
| 1000 | 1581510 | Cm54 | Cardiac mass QTL 54 | 3.4 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 5 | 120740824 | 143608494 | Rat | n/a | region | qtl |
| 1000 | 1641920 | Colcs1 | Colorectal carcinoma susceptibility QTL 1 | 2.99 | 0.0055 | intestine integrity trait (VT:0010554) | benign colorectal tumor surface area measurement (CMO:0001799) | 5 | 121846814 | 166846814 | Rat | n/a | region | qtl |
| 1000 | 1641920 | Colcs1 | Colorectal carcinoma susceptibility QTL 1 | 2.99 | 0.0055 | intestine integrity trait (VT:0010554) | benign colorectal tumor surface area measurement (CMO:0001799) | 5 | 121846814 | 166846814 | Rat | n/a | region | qtl |
| 1000 | 10053720 | Scort26 | Serum corticosterone level QTL 26 | 2.06 | 0.0147 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 5 | 124965598 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 10053720 | Scort26 | Serum corticosterone level QTL 26 | 2.06 | 0.0147 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 5 | 124965598 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 724525 | Bp147 | Blood pressure QTL 147 | 4.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 126424772 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 724525 | Bp147 | Blood pressure QTL 147 | 4.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 126424772 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 1598819 | Bp292 | Blood pressure QTL 292 | 4.3 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 127798274 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 1598819 | Bp292 | Blood pressure QTL 292 | 4.3 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 127798274 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 1598861 | Cm64 | Cardiac mass QTL 64 | 2.9 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 127798274 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 1598861 | Cm64 | Cardiac mass QTL 64 | 2.9 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 127798274 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 8694169 | Bw148 | Body weight QTL 148 | 5 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 128506074 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 8694169 | Bw148 | Body weight QTL 148 | 5 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 128506074 | 166875058 | Rat | n/a | region | qtl |
| 1000 | 8552908 | Pigfal4 | Plasma insulin-like growth factor 1 level QTL 4 | 6.6 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 128506074 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 8552908 | Pigfal4 | Plasma insulin-like growth factor 1 level QTL 4 | 6.6 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 128506074 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 634349 | Bp139 | Blood pressure QTL 139 | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 128924607 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 634349 | Bp139 | Blood pressure QTL 139 | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 128924607 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 1331803 | Rf32 | Renal function QTL 32 | 2.798 | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 5 | 129132428 | 143070159 | Rat | n/a | region | qtl | |
| 1000 | 1331803 | Rf32 | Renal function QTL 32 | 2.798 | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 5 | 129132428 | 143070159 | Rat | n/a | region | qtl | |
| 1000 | 70156 | Niddm30 | Non-insulin dependent diabetes mellitus QTL 30 | 3.98 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 5 | 129132447 | 151006154 | Rat | n/a | region | qtl | |
| 1000 | 70156 | Niddm30 | Non-insulin dependent diabetes mellitus QTL 30 | 3.98 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 5 | 129132447 | 151006154 | Rat | n/a | region | qtl | |
| 1000 | 738018 | Anxrr4 | Anxiety related response QTL 4 | 5.1 | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 5 | 130130159 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 738018 | Anxrr4 | Anxiety related response QTL 4 | 5.1 | exploratory behavior trait (VT:0010471) | percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) | 5 | 130130159 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 7794791 | Mcs33 | Mammary carcinoma susceptibility QTL 33 | 1.93 | mammary gland integrity trait (VT:0010552) | mammary tumor incidence/prevalence measurement (CMO:0000946) | 5 | 131345754 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 7794791 | Mcs33 | Mammary carcinoma susceptibility QTL 33 | 1.93 | mammary gland integrity trait (VT:0010552) | mammary tumor incidence/prevalence measurement (CMO:0000946) | 5 | 131345754 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 631505 | Bp103 | Blood pressure QTL 103 | 3.2 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 132717196 | 165560427 | Rat | n/a | region | qtl | |
| 1000 | 631505 | Bp103 | Blood pressure QTL 103 | 3.2 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 132717196 | 165560427 | Rat | n/a | region | qtl | |
| 1000 | 631562 | Apr2 | Acute phase response QTL 2 | 3.7 | blood murinoglobulin 1 amount (VT:0010597) | plasma murinoglobulin 1 level (CMO:0001931) | 5 | 135927956 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 631562 | Apr2 | Acute phase response QTL 2 | 3.7 | blood murinoglobulin 1 amount (VT:0010597) | plasma murinoglobulin 1 level (CMO:0001931) | 5 | 135927956 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 61444 | Strs2 | Sensitivity to stroke QTL 2 | 4.7 | cerebrum integrity trait (VT:0010549) | post-insult time to onset of cerebrovascular lesion (CMO:0002343) | 5 | 135929696 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 61444 | Strs2 | Sensitivity to stroke QTL 2 | 4.7 | cerebrum integrity trait (VT:0010549) | post-insult time to onset of cerebrovascular lesion (CMO:0002343) | 5 | 135929696 | 166875058 | Rat | n/a | region | qtl | |
| 1000 | 70223 | Bp57 | Blood pressure QTL 57 | 5 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 1 | 80676123 | Rat | n/a | region | qtl | |
| 1000 | 8662860 | Vetf10 | Vascular elastic tissue fragility QTL 10 | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 10 | 6154182 | 73453136 | Rat | n/a | region | qtl | ||
| 1000 | 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6357896 | 96121100 | Rat | n/a | region | qtl | |
| 1000 | 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9658275 | 104670812 | Rat | n/a | region | qtl | |
| 1000 | 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14487011 | 104060283 | Rat | n/a | region | qtl | |
| 1000 | 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14487011 | 89062041 | Rat | n/a | region | qtl | |
| 1000 | 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14487011 | 107057807 | Rat | n/a | region | qtl | |
| 1000 | 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 19816042 | 99406971 | Rat | n/a | region | qtl |
| 1000 | 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 22427500 | 90627625 | Rat | n/a | region | qtl | |
| 1000 | 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl | |
| 1000 | 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl | |
| 1000 | 61354 | Pia10 | Pristane induced arthritis QTL 10 | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl | |
| 1000 | 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98003205 | Rat | n/a | region | qtl | |
| 1000 | 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98952741 | Rat | n/a | region | qtl | |
| 1000 | 2300171 | Bmd58 | Bone mineral density QTL 58 | 4.9 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 26944628 | 71944628 | Rat | n/a | region | qtl |
| 1000 | 2292441 | Bp308 | Blood pressure QTL 308 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 27606468 | 72606468 | Rat | n/a | region | qtl | ||
| 1000 | 10402859 | Bp381 | Blood pressure QTL 381 | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 27606468 | 72606468 | Rat | n/a | region | qtl | |
| 1000 | 724527 | Bp148 | Blood pressure QTL 148 | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 28453136 | 73453136 | Rat | n/a | region | qtl | |
| 1000 | 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 29299504 | 107211142 | Rat | n/a | region | qtl | |
| 1000 | 631557 | Bp136 | Blood pressure QTL 136 | 0.003 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 30632053 | 75632053 | Rat | n/a | region | qtl | |
| 1000 | 1576311 | Pia26 | Pristane induced arthritis QTL 26 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 31224026 | 75632053 | Rat | n/a | region | qtl | ||
| 1000 | 1578779 | Tcas10 | Tongue tumor susceptibility QTL 10 | 3.12 | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 10 | 31297439 | 76297439 | Rat | n/a | region | qtl | |
| 1000 | 1576319 | Cia29 | Collagen induced arthritis QTL 29 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 33973921 | 78973921 | Rat | n/a | region | qtl | ||
| 1000 | 2317042 | Aia20 | Adjuvant induced arthritis QTL 20 | 3.38 | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 37565079 | 82565079 | Rat | n/a | region | qtl | |
| 1000 | 2317043 | Aia7 | Adjuvant induced arthritis QTL 7 | 3.82 | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 37565079 | 82565079 | Rat | n/a | region | qtl | |
| 1000 | 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat | n/a | region | qtl | |
| 1000 | 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat | n/a | region | qtl | |
| 1000 | 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | 0.0041 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 10 | 40035094 | 102359817 | Rat | n/a | region | qtl | |
| 1000 | 631552 | Vetf2 | Vascular elastic tissue fragility QTL 2 | 4.5 | 0.0002 | aorta elastic tissue integrity trait (VT:0010556) | artery internal elastic lamina non-tumorous lesion count (CMO:0001913) | 10 | 41142633 | 86142633 | Rat | n/a | region | qtl |
| 1000 | 61463 | Bp12 | Blood pressure QTL 12 | 6.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 41333258 | 86333258 | Rat | n/a | region | qtl |
| 1000 | 8552805 | Bw145 | Body weight QTL 145 | 2.2 | body mass (VT:0001259) | change in body weight to body weight ratio (CMO:0002216) | 10 | 41944526 | 78307017 | Rat | n/a | region | qtl | |
| 1000 | 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | 0.00025 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 42045676 | 104670812 | Rat | n/a | region | qtl |
| 1000 | 70198 | BpQTLcluster9 | Blood pressure QTL cluster 9 | 2.94 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 42323132 | 87323132 | Rat | n/a | region | qtl | |
| 1000 | 6893342 | Cm78 | Cardiac mass QTL 78 | 0.1 | 0.88 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 42876766 | 79813922 | Rat | n/a | region | qtl |
| 1000 | 8694173 | Bw149 | Body weight QTL 149 | 4.38 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 10 | 44441699 | 89441699 | Rat | n/a | region | qtl |
| 1000 | 9589030 | Epfw9 | Epididymal fat weight QTL 9 | 19.24 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 10 | 44441699 | 89441699 | Rat | n/a | region | qtl |
| 1000 | 7411614 | Foco18 | Food consumption QTL 18 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 44441699 | 89441699 | Rat | n/a | region | qtl | |
| 1000 | 2300218 | Hpcl2 | Hepatic cholesterol level QTL 2 | liver cholesterol amount (VT:0010498) | liver cholesterol level (CMO:0001597) | 10 | 45029650 | 95600334 | Rat | n/a | region | qtl | ||
| 1000 | 631547 | Bp87 | Blood pressure QTL 87 | 4.5 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 47369470 | 92369470 | Rat | n/a | region | qtl | |
| 1000 | 2293652 | Bmd22 | Bone mineral density QTL 22 | 4.9 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 2293705 | Bmd25 | Bone mineral density QTL 25 | 7.1 | 0.0001 | femur mineral mass (VT:0010011) | compact volumetric bone mineral density (CMO:0001730) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 2293679 | Bmd30 | Bone mineral density QTL 30 | 3.5 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 2293669 | Bmd33 | Bone mineral density QTL 33 | 4.5 | 0.0001 | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 7207811 | Bmd90 | Bone mineral density QTL 90 | 5.2 | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl | |
| 1000 | 1549846 | Scl47 | Serum cholesterol level QTL 47 | 3.6 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 50574707 | 95574707 | Rat | n/a | region | qtl | |
| 1000 | 70364 | Bp72 | Blood pressure QTL 72 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 51121100 | 96121100 | Rat | n/a | region | qtl | ||
| 1000 | 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 10 | 51770177 | 107211142 | Rat | n/a | region | qtl | |
| 1000 | 1359017 | Hrtrt21 | Heart rate QTL 21 | 2.4 | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 10 | 51772940 | 96772940 | Rat | n/a | region | qtl | |
| 1000 | 631530 | Tls3 | T-lymphoma susceptibility QTL 3 | 0 | 0.0001 | thymus integrity trait (VT:0010555) | percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911) | 10 | 51774612 | 95600334 | Rat | n/a | region | qtl |
| 1000 | 631535 | Cm51 | Cardiac mass QTL 51 | 3 | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 10 | 51786282 | 91669536 | Rat | n/a | region | qtl | |
| 1000 | 70171 | Cari1 | Carrageenan-induced inflammation QTL 1 | 4.9 | 0.0005 | hypodermis integrity trait (VT:0010550) | inflammatory exudate volume (CMO:0001429) | 10 | 53797385 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 70164 | Bw21 | Body weight QTL 21 | 4.36 | 0.00005 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 53797494 | 98952626 | Rat | n/a | region | qtl |
| 1000 | 1354608 | Cm33 | Cardiac mass QTL 33 | 2.8 | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 10 | 54809292 | 99809292 | Rat | n/a | region | qtl | |
| 1000 | 2312672 | Insul15 | Insulin level QTL 15 | 0.01 | blood insulin amount (VT:0001560) | serum insulin level (CMO:0000358) | 10 | 57134272 | 102134272 | Rat | n/a | region | qtl | |
| 1000 | 2312668 | Scl65 | Serum cholesterol level QTL 65 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 57134272 | 102134272 | Rat | n/a | region | qtl | |
| 1000 | 2312662 | Slep8 | Serum leptin concentration QTL 8 | 0.05 | blood leptin amount (VT:0005667) | serum leptin level (CMO:0000780) | 10 | 57134272 | 102134272 | Rat | n/a | region | qtl | |
| 1000 | 1549831 | Bss6 | Bone structure and strength QTL 6 | 4 | lumbar vertebra strength trait (VT:0010574) | vertebra ultimate force (CMO:0001678) | 10 | 57576521 | 102576521 | Rat | n/a | region | qtl | |
| 1000 | 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 10 | 59209888 | 104209888 | Rat | n/a | region | qtl |
| 1000 | 2306970 | Anxrr22 | Anxiety related response QTL 22 | 5.95 | fear/anxiety-related behavior trait (VT:1000241) | number of periods of voluntary immobility (CMO:0001045) | 10 | 61345276 | 98211570 | Rat | n/a | region | qtl | |
| 1000 | 70363 | Bp71 | Blood pressure QTL 71 | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 61345276 | 81714865 | Rat | n/a | region | qtl | |
| 1000 | 1558643 | Cm44 | Cardiac mass QTL 44 | 4.8 | 0.0000368 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 61345276 | 99703528 | Rat | n/a | region | qtl |
| 1000 | 6893336 | Cm75 | Cardiac mass QTL 75 | 0.1 | 0.87 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 61345276 | 99703528 | Rat | n/a | region | qtl |
| 1000 | 61402 | Niddm3 | Non-insulin dependent diabetes mellitus QTL 3 | 4.58 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 61345413 | 82564856 | Rat | n/a | region | qtl | |
| 1000 | 2313105 | Bss79 | Bone structure and strength QTL 79 | 1.8 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 62057807 | 107057807 | Rat | n/a | region | qtl |
| 1000 | 2313103 | Bss80 | Bone structure and strength QTL 80 | 2 | 0.0001 | tibia strength trait (VT:1000284) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 10 | 62057807 | 107057807 | Rat | n/a | region | qtl |
| 1000 | 61449 | Ciaa2 | CIA Autoantibody QTL 2 | 7.1 | blood autoantibody amount (VT:0003725) | calculated serum anti-type 2 collagen antibody titer (CMO:0001279) | 10 | 63221094 | 107211142 | Rat | n/a | region | qtl | |
| 1000 | 2298481 | Eau9 | Experimental allergic uveoretinitis QTL 9 | 0.0169 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 65927233 | 82565079 | Rat | n/a | region | qtl | |
| 1000 | 1357344 | Bp249 | Blood pressure QTL 249 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 66743655 | 98003205 | Rat | n/a | region | qtl | |
| 1000 | 631565 | Hcuc4 | Hepatic copper content QTL 4 | 4.15 | liver copper amount (VT:0003065) | liver copper weight to liver dry weight ratio (CMO:0001512) | 10 | 66941813 | 73452992 | Rat | n/a | region | qtl | |
| 1000 | 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 66978955 | 107211142 | Rat | n/a | region | qtl | |
| 1000 | 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 66978955 | 107211142 | Rat | n/a | region | qtl | |
| 1000 | 2289985 | Bp305 | Blood pressure QTL 305 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 67502108 | 73579767 | Rat | n/a | region | qtl | ||
| 1000 | 10450498 | Bp384 | Blood pressure QTL 384 | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 67750049 | 107211142 | Rat | n/a | region | qtl | |
| 1000 | 1642290 | Bp299 | Blood pressure QTL 299 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68230134 | 69282520 | Rat | n/a | region | qtl | ||
| 1000 | 1642980 | Bp300 | Blood pressure QTL 300 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68383129 | 107211142 | Rat | n/a | region | qtl | ||
| 1000 | 61396 | Bp9 | Blood pressure QTL 9 | 4.8 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68420376 | 107211142 | Rat | n/a | region | qtl |
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