rs118051921 Rat Genome Database

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Variant: rs118051921 -  Homo sapiens

RGD ID: 329334404
RS ID: rs118051921
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LBP  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh38 20 38,350,670
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs118051921Humanneutrophil phagocytosis trait  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:34648354

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs118051921Humanbactericidal permeability-increasing protein measurement  IAGP 405850206 GWAS_CATALOGPMID:34648354
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1275772_H GCST90246731 Bactericidal permeability-increasing protein levels 10,708 European ancestry individuals A 0.03 1E-50 50 rs118051921 0.651 bactericidal permeability-increasing protein measurement (EFO:0020172)
PMID:34648354

Variant Details
Variant Transcripts
Gene Symbol:LBP
Accession:NM_004139
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST90246731 GWAS Catalog