rs59192196 Rat Genome Database

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Variant: rs59192196 -  Homo sapiens

RGD ID: 155846367
RS ID: rs59192196
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: BPI  
Reference Nucleotide: T
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh38 20 38,329,714
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs59192196Humanneutrophil phagocytosis trait  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:36168886

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs59192196Humanbactericidal permeability-increasing protein measurement  IAGP 405850206 GWAS_CATALOGPMID:36168886
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1367635_H GCST90161970 Bactericidal permeability-increasing protein levels 2,935 Qatari ancestry individuals A 0.141738 5E-33 32.302 rs59192196 0.459773 bactericidal permeability-increasing protein measurement (EFO:0020172)
PMID:36168886

Variant Details
Variant Transcripts
Gene Symbol:BPI
Accession:NM_001725
Location:INTRON

Gene Symbol:BPI
Accession:XM_047440394
Location:INTRON

Gene Symbol:BPI
Accession:XM_024451972
Location:INTRON

Gene Symbol:BPI
Accession:XM_047440395
Location:INTRON

Gene Symbol:BPI
Accession:XM_047440393
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST90161970 GWAS Catalog