rs2421770 Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Variant: rs2421770 -  Homo sapiens

RGD ID: 151262447
RS ID: rs2421770
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: SLC1A2  
Reference Nucleotide: G
Variant Nucleotide: C
Position
Assembly Chr Position
GRCh38 11 35,299,333
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs2421770Humanresponse to bacterial infection trait  IAGP 405850206 GWAS_CATALOGPMID:26569114

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs2421770Humanpersistent Staphylococcus aureus carrier status  IAGP 405850206 GWAS_CATALOGPMID:26569114
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1488511_H GCST003182 Staphylococcus aureus nasal carriage (persistent) 141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals C 0.62 0.000008 5.097 rs2421770 1.83 persistent Staphylococcus aureus carrier status (EFO:0007757)
PMID:26569114

Variant Details
Variant Transcripts
Gene Symbol:SLC1A2
Accession:XM_047427437
Location:INTRON

Gene Symbol:SLC1A2
Accession:NM_001252652
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_017018136
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_011520285
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_017018138
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_047427441
Location:INTRON

Gene Symbol:SLC1A2
Accession:NM_001195728
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_047427438
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_017018137
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_047427436
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_047427443
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_047427442
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_017018139
Location:INTRON

Gene Symbol:SLC1A2
Accession:XM_047427440
Location:INTRON

Gene Symbol:SLC1A2
Accession:NM_004171
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST003182 GWAS Catalog