rs16993852 Rat Genome Database

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Variant: rs16993852 -  Homo sapiens

RGD ID: 151261926
RS ID: rs16993852
Genic Status: INTERGENIC
Type: SNV (SO:0001483) 
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh38 4 37,736,367
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs16993852Humanresponse to bacterial infection trait  IAGP 405850206 GWAS_CATALOGPMID:26569114

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs16993852Humanintermittent Staphylococcus aureus carrier status  IAGP 405850206 GWAS_CATALOGPMID:26569114
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1488514_H GCST003181 Staphylococcus aureus nasal carriage (intermittent) 97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals T 0.04 3E-7 6.523 rs16993852 6.93 intermittent Staphylococcus aureus carrier status (EFO:0007758)
 PMID:26569114

Variant Details
Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST003181 GWAS Catalog