rs7611684 Rat Genome Database

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Variant: rs7611684 -  Homo sapiens

RGD ID: 151261925
RS ID: rs7611684
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: UBE2E2  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh38 3 23,441,321
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs7611684Humanresponse to bacterial infection trait  IAGP 405850206 GWAS_CATALOGPMID:26569114

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs7611684Humanintermittent Staphylococcus aureus carrier status  IAGP 405850206 GWAS_CATALOGPMID:26569114
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1189653_H GCST003181 Staphylococcus aureus nasal carriage (intermittent) 97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals A 0.1 0.000003 5.523 rs7611684 3.26 intermittent Staphylococcus aureus carrier status (EFO:0007758)
PMID:26569114

Variant Details
Variant Transcripts
Gene Symbol:UBE2E2
Accession:NM_001370227
Location:INTRON

Gene Symbol:UBE2E2
Accession:XM_047448843
Location:INTRON

Gene Symbol:UBE2E2
Accession:NM_001370226
Location:INTRON

Gene Symbol:UBE2E2
Accession:XM_017007126
Location:INTRON

Gene Symbol:UBE2E2
Accession:XM_047448845
Location:INTRON

Gene Symbol:UBE2E2
Accession:NM_152653
Location:INTRON

Gene Symbol:UBE2E2
Accession:NM_001370228
Location:INTRON

Gene Symbol:UBE2E2
Accession:NM_001370225
Location:INTRON

Gene Symbol:UBE2E2
Accession:XM_047448844
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST003181 GWAS Catalog