rs61440199 Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Variant: rs61440199 -  Homo sapiens

RGD ID: 151261924
RS ID: rs61440199
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: KAT2B  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh38 3 20,070,054
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs61440199Humanresponse to bacterial infection trait  IAGP 405850206 GWAS_CATALOGPMID:26569114

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs61440199Humanintermittent Staphylococcus aureus carrier status  IAGP 405850206 GWAS_CATALOGPMID:26569114
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1189652_H GCST003181 Staphylococcus aureus nasal carriage (intermittent) 97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals A 0.03 9E-9 8.046 rs61440199 8.68 intermittent Staphylococcus aureus carrier status (EFO:0007758)
PMID:26569114

Variant Details
Variant Transcripts
Gene Symbol:KAT2B
Accession:XM_047449147
Location:5UTRS;INTRON

Gene Symbol:KAT2B
Accession:XM_005265528
Location:INTRON

Gene Symbol:KAT2B
Accession:NM_003884
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST003181 GWAS Catalog