rs118047622 Rat Genome Database

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Variant: rs118047622 -  Homo sapiens

RGD ID: 151261921
RS ID: rs118047622
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: MKLN1  
Reference Nucleotide: G
Variant Nucleotide: C
Position
Assembly Chr Position
GRCh38 7 131,134,323
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs118047622Humanresponse to bacterial infection trait  IAGP 405850206 GWAS_CATALOGPMID:26569114

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs118047622Humanpersistent Staphylococcus aureus carrier status  IAGP 405850206 GWAS_CATALOGPMID:26569114
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1488512_H GCST003182 Staphylococcus aureus nasal carriage (persistent) 141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals C 0.13 0.000002 5.699 rs118047622 2.57 persistent Staphylococcus aureus carrier status (EFO:0007757)
PMID:26569114

Variant Details
Variant Transcripts
Gene Symbol:MKLN1
Accession:NM_001145354
Location:5UTRS;INTRON

Gene Symbol:MKLN1
Accession:XM_047420401
Location:5UTRS;INTRON

Gene Symbol:MKLN1
Accession:XM_011516224
Location:INTRON

Gene Symbol:MKLN1
Accession:XM_047420402
Location:INTRON

Gene Symbol:MKLN1
Accession:XM_006715993
Location:INTRON

Gene Symbol:MKLN1
Accession:NM_001321316
Location:INTRON

Gene Symbol:MKLN1
Accession:NM_013255
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST003182 GWAS Catalog