rs2154187 Rat Genome Database

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Variant: rs2154187 -  Homo sapiens

RGD ID: 151253315
RS ID: rs2154187
Genic Status: INTERGENIC
Type: SNV (SO:0001483) 
Reference Nucleotide: C
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh38 20 38,338,968
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs2154187Humanblood basophil count  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494
rs2154187Humanblood granulocyte count  IAGP 405850206 GWAS_CATALOGPMID:32888494

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs2154187Humanbasophil quantity  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494
rs2154187Humanneutrophil phagocytosis trait  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:36168886

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs2154187Humanbactericidal permeability-increasing protein measurement  IAGP 405850206 GWAS_CATALOGPMID:36168886
rs2154187Humanbasophil count  IAGP 405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1154058_H GCST90002379 Basophil count 408,112 British individuals A 0.528289 2E-10 9.699 rs2154187 0.014166179 basophil count (EFO:0005090)
PMID:32888494
GWAS1367845_H GCST90161970 Bactericidal permeability-increasing protein levels 2,935 Qatari ancestry individuals A 0.344123 7E-12 11.155 rs2154187 0.192285 bactericidal permeability-increasing protein measurement (EFO:0020172)
PMID:36168886

Variant Details
Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST90002379 GWAS Catalog