Strain Report - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja

Symbol: LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja
Strain: LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)
Substrain: Tja
RGD ID: 9685759
Citation ID: RRID:RRRC_00709
Ontology ID: RS:0003858
Also Known As: LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja; LEW.WCrgn1,2; NBRP Rat No: 0729
Type: congenic
Available Source: National BioResource Project for the Rat in Japan, Rat Resource and Research Center
Origination: Imperial College, London, UK
Description: Segment of interest from chr 13 and chr 16 of WKY/NCrl were introgressed into LEW/SsNHsd
Coat Color: Albino
Last Known Status: Cryopreserved Embryo; Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21360,933,298 - 92,436,175RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.216832,236 - 56,733,837RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0161,550,187 - 60,316,851RGD_MAPPER_PIPELINERnor6.0
Rnor_6.01366,075,608 - 98,985,851RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0161,534,408 - 59,992,088RGD_MAPPER_PIPELINERnor5.0
Rnor_5.01371,047,218 - 103,987,907RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.416819,225 - 60,432,230RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.41363,175,274 - 96,441,728RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D13Arb15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21392,435,878 - 92,436,175 (+)MAPPER
Rnor_6.01397,292,096 - 97,292,389NCBI
Rnor_6.01398,985,558 - 98,985,851NCBI
Rnor_5.013102,312,687 - 102,312,980UniSTS
Rnor_5.013103,987,614 - 103,987,907UniSTS
RGSC_v3.41396,441,434 - 96,441,728RGD
RGSC_v3.41396,441,435 - 96,441,728UniSTS
RGSC_v3.11396,630,371 - 96,630,664RGD
Celera1391,981,575 - 91,981,868UniSTS
RH 3.4 Map13626.3UniSTS
RH 3.4 Map13626.3RGD
RH 2.0 Map13670.3RGD
SHRSP x BN Map1344.1698RGD
Cytogenetic Map13 RGD

Flank 2 / 1 (D13Rat77)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21360,933,298 - 60,933,518 (+)MAPPER
Rnor_6.01366,075,608 - 66,075,827NCBI
Rnor_5.01371,047,218 - 71,047,437UniSTS
RGSC_v3.41363,175,274 - 63,175,600RGD
RGSC_v3.41363,175,311 - 63,175,530UniSTS
RGSC_v3.11363,189,391 - 63,189,610RGD
Celera1360,931,410 - 60,931,629UniSTS
RH 3.4 Map13282.8UniSTS
RH 3.4 Map13282.8RGD
RH 2.0 Map13421.2RGD
SHRSP x BN Map1322.6498RGD
FHH x ACI Map1322.65RGD

Flank 1 / 2 (D16Rat40)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21656,733,634 - 56,733,837 (+)MAPPER
Rnor_6.01660,316,649 - 60,316,851NCBI
Rnor_5.01659,991,886 - 59,992,088UniSTS
RGSC_v3.41660,432,027 - 60,432,230RGD
RGSC_v3.41660,432,028 - 60,432,230UniSTS
RGSC_v3.11660,432,103 - 60,432,305RGD
Celera1654,783,810 - 54,784,012UniSTS
RH 3.4 Map16557.1RGD
RH 3.4 Map16557.1UniSTS
RH 2.0 Map16642.8RGD
SHRSP x BN Map1622.66RGD
Cytogenetic Map16q12.2UniSTS

Flank 2 / 2 (D16Rat88)
Rat AssemblyChrPosition (strand)Source
mRatBN7.216832,236 - 832,380 (+)MAPPER
Rnor_6.0161,550,187 - 1,550,330NCBI
Rnor_5.0161,534,408 - 1,534,551UniSTS
RGSC_v3.416819,226 - 819,369UniSTS
RGSC_v3.416819,225 - 819,369RGD
RGSC_v3.116819,226 - 819,369RGD
Celera16812,123 - 812,266UniSTS
RH 3.4 Map18655.3RGD
RH 3.4 Map18655.3UniSTS
RH 2.0 Map18257.7RGD
SHRSP x BN Map161.1999RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease Development of glomerular crescents, a hallmark of crescentic glomerulonephritis (CRGN) after the induction of nephrotoxic serum in this Lewis-related bicongenic strain, compared to parental Lewis strain which is resistant to CRGN. 1302502
strain_reproduction Good breeding performance, 6-8 litters, normal diet, water acidification, no supplements, no medications. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-03 LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja    LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja    Name updated 68913 APPROVED
2015-06-03 LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja    LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja    Name updated 68913 APPROVED
2015-06-03 LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja    LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja    Name updated 68913 APPROVED
2015-06-03 LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja    LEW.WKY-(D13Arb15-D13Rat77)(D16Rat40-D16Rat88)/Tja    Name updated 68913 APPROVED

Database Acc Id Source(s)
RRRC RRRC:00709 RGD