Strain Report - Rat Genome Database

Name: SS.LEW-( D10Rat155-D10Chm171 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.LEW-(D10Rat155-D10Chm171)/Ayd

Symbol:

SS.LEW-(D10Rat155-D10Chm171)/Ayd

Strain:

SS.LEW-(D10Rat155-D10Chm171)

Substrain:

Ayd

RGD ID:

8657392

Citation ID:

RRID:RGD_8657392

Ontology ID:

RS:0003780

Previously known as:

C10S.L33; SS.LEW-(D10Rat155-D10Chm171)/Ayd

Type:

congenic

Source:

Research Centre, Centre Hospitalier de l'Universite de Montreal (CHUM), Montreal, Quebec, Canada

Origin:

A sub congenic strain derived from the progenitor strain SS.LEW-(D10Chm224-D10Chm6)/Ayd.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	66,978,955 - 67,750,281	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	69,385,595 - 70,167,191	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	69,020,437 - 69,797,898	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	70,229,781 - 71,032,765	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Experimental Data Annotations Click to see Annotation Detail View

Rat Strain

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SS.LEW-(D10Rat155-D10Chm171)/Ayd		IEA		7241799		RGD

Vertebrate Trait

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
heart left ventricle size trait		EXP		8657382		RGD

Disease Annotations Click to see Annotation Detail View

Hypertrophy (IAGP)

Ventricular Dysfunction, Left (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Unique quantitative trait loci in synergy permanently improve diastolic dysfunction.	Chauvet C, etal., Can J Cardiol. 2013 Oct;29(10):1302-9. doi: 10.1016/j.cjca.2013.03.012. Epub 2013 Jun 14.
2.	Genetics of systolic and diastolic heart failure.	Deng AY J Hypertens. 2015 Jan;33(1):3-13. doi: 10.1097/HJH.0000000000000400.
3.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat155)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	66,978,955 - 66,979,128 (+)	MAPPER
Rnor_6.0	10	69,385,595 - 69,385,767	NCBI
Rnor_5.0	10	69,020,437 - 69,020,609	UniSTS
RGSC_v3.4	10	70,229,781 - 70,229,954	RGD
RGSC_v3.4	10	70,229,782 - 70,229,954	UniSTS
RGSC_v3.1	10	70,243,404 - 70,243,577	RGD
Celera	10	65,926,485 - 65,926,657	UniSTS
RH 2.0 Map	10	667.6	RGD
SHRSP x BN Map	10	47.6399	RGD

Flank 2 / 1 (D10Chm171)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,750,049 - 67,750,281 (+)	MAPPER
Rnor_6.0	10	70,166,960 - 70,167,191	NCBI
Rnor_5.0	10	69,797,667 - 69,797,898	UniSTS
RGSC_v3.4	10	71,032,534 - 71,032,765	UniSTS
Celera	10	66,694,510 - 66,694,687	UniSTS
Cytogenetic Map	10	q26	UniSTS

Strain QTL Data

Symbol	Name	Trait
Bp374	Blood pressure QTL 374	heart left ventricle size trait (VT:0002753)

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.LEW-(D10Rat155-D10Chm171)/Ayd