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Strain Registration

General

Strain: DA.PVG.1AV1-(D4Rat107-D4Got132)/Kini

Symbol:

DA.PVG.1AV1-(D4Rat107-D4Got132)/Kini

Strain:

DA.PVG.1AV1-(D4Rat107-D4Got132)

Substrain:

Kini

RGD ID:

8552346

Citation ID:

RRID:RGD_8552346

Ontology ID:

RS:0003748

Also Known As:

DA.PVG.1AV1-Eae20; NBRP Rat No: 0699; DA.PVG.1AV1-(D4Rat107-D4Got132)/Kini

Type:

congenic

Available Source:

National BioResource Project for the Rat in Japan

Origination:

Center for Molecular Medicine, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden

Description:

Inbred Dark Agouti (DA) rats were originally obtained from Hannover, Germany and Piebald Virol Glaxo(PVG) rats from Harlan UK Limited (Blackthorn, UK). Congenic strain was established by selective transferring of PVG alleles in the interval between D4Rat137 and D4Kiru157 onto DA background in minimum of 13 backcross generations.

Coat Color:

agouti

Last Known Status:

Cryopreserved Sperm

Research Usage

Neurobiology

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	154,597,593 - 154,597,827	RGD_MAPPER_PIPELINE
mRatBN7.2	4	152,925,326 - 158,841,762	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	4	152,249,616 - 158,564,471	RGD_MAPPER_PIPELINE	Rnor_6.0
Rnor_5.0	4	219,336,960 - 225,566,369	RGD_MAPPER_PIPELINE	Rnor_5.0
RGSC_v3.4	4	156,090,003 - 162,362,144	RGD_MAPPER_PIPELINE	RGSC_v3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Strains registered by the National Bio Resource Project for the Rat in Japan	Personal Communication with NBRP
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Rat107)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	154,597,593 - 154,597,827 (+)	Marker Load Pipeline
mRatBN7.2	4	152,925,326 - 152,925,562 (+)	MAPPER
Rnor_6.0	4	152,249,616 - 152,249,849	NCBI
Rnor_5.0	4	219,336,960 - 219,337,193	UniSTS
RGSC_v3.4	4	156,090,003 - 156,090,237	RGD
RGSC_v3.4	4	156,090,004 - 156,090,237	UniSTS
Celera	4	141,780,453 - 141,780,686	UniSTS
RGSC_v3.1	4	156,334,845 - 156,335,078	RGD
RH 3.4 Map	4	978.8	UniSTS
RH 3.4 Map	4	978.8	RGD
RH 2.0 Map	4	972.5	RGD
SHRSP x BN Map	4	77.0299	RGD
Cytogenetic Map	4	q42	UniSTS

Flank 2 / 1 (D4Got132)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	158,841,508 - 158,841,762 (+)	MAPPER
Rnor_6.0	4	158,564,220 - 158,564,471	NCBI
Rnor_5.0	4	225,566,118 - 225,566,369	UniSTS
RGSC_v3.4	4	162,361,892 - 162,362,144	RGD
RGSC_v3.4	4	162,361,893 - 162,362,144	UniSTS
Celera	4	147,567,471 - 147,567,722	UniSTS
RGSC_v3.1	4	162,606,829 - 162,607,080	RGD
RH 3.4 Map	4	1002.1	RGD
RH 3.4 Map	4	1002.1	UniSTS

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_characteristics	Protection against experimental autoimmune encephalomyelitis (EAE) compared to the susceptible parental DA strain.	1302502
strain_reproduction	Good breeding performance	1302502

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: DA.PVG.1AV1-(D4Rat107-D4Got132)/Kini