Strain Report - Rat Genome Database

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Strain: SS.LEW-(D18Chm59-D18Rat1)/Ayd

Symbol: SS.LEW-(D18Chm59-D18Rat1)/Ayd
Strain: SS.LEW-(D18Chm59-D18Rat1)
Substrain: Ayd
RGD ID: 8551789
Citation ID: RRID:RGD_8551789
Ontology ID: RS:0003681
Also Known As: DSS.Lewis-(D18Chm162-D18Chm172)/Lt; SS.LEW-(D18Chm162-D18Chm172)/Ayd; SS.LEW-(D18Chm162-D18Chm172)/Ayd; SS.LEW-(D18Chm59-D18Rat1)/Ayd; C18S.L10
Type: congenic
Available Source: Not Available
Origination: Research Centre-CHUM, Montreal, Quebec, Canada
Description: SS/Jr and LEW/Crlc were backcrossed for 5 generations, then BC5 rat was mated with LEW/Crlc to produce the desired congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21865,970,331 - 83,213,037RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01867,627,706 - 87,074,531RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01866,790,645 - 86,108,580RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41869,138,888 - 86,857,890RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure

References

References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. alpha-Kinase 2 is a novel candidate gene for inherited hypertension in Dahl rats. Chauvet C, etal., J Hypertens. 2011 Jul;29(7):1320-6. doi: 10.1097/HJH.0b013e32834705e4.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D18Chm59)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21865,970,331 - 65,970,689 (+)MAPPER
mRatBN7.21865,970,534 - 65,970,689 (+)MAPPER
Rnor_6.01867,627,706 - 67,628,100NCBI
Rnor_6.01867,627,948 - 67,628,100NCBI
Rnor_5.01866,790,887 - 66,791,039UniSTS
Rnor_5.01866,790,645 - 66,791,039UniSTS
RGSC_v3.41869,138,888 - 69,139,040UniSTS
Celera1863,999,424 - 63,999,576UniSTS
Cytogenetic Map18q12.2UniSTS

Flank 2 / 1 (D18Rat1)
Rat AssemblyChrPosition (strand)Source
GRCr81885,487,615 - 85,487,725 (+)Marker Load Pipeline
mRatBN7.21883,212,927 - 83,213,037 (+)MAPPER
Rnor_6.01887,074,422 - 87,074,531NCBI
Rnor_5.01886,108,471 - 86,108,580UniSTS
RGSC_v3.41886,857,780 - 86,857,890RGD
RGSC_v3.41886,857,781 - 86,857,890UniSTS
RGSC_v3.11886,931,231 - 86,931,340RGD
Celera1881,762,401 - 81,762,504UniSTS
RH 3.4 Map18830.3UniSTS
RH 3.4 Map18830.3RGD
RH 2.0 Map180.0RGD
FHH x ACI Map1864.5199RGD

Additional Information