Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: SS.LEW-(D18Chm90-D18Chm4)/Ayd

Symbol: SS.LEW-(D18Chm90-D18Chm4)/Ayd
Strain: SS.LEW-(D18Chm90-D18Chm4)
Substrain: Ayd
RGD ID: 8551782
Citation ID: RRID:RGD_8551782
Ontology ID: RS:0003678
Also Known As: DSS.Lewis-(D18Rat29-D18Rat67)/Lt; SS.LEW-(D18Rat29-D18Rat67)/Ayd; SS.LEW-(D18Rat29-D18Rat67)/Ayd; SS.LEW-(D18Chm90-D18Chm4)/Ayd; C18S.L16
Type: congenic
Available Source: Not Available
Origination: Research Centre-CHUM, Montreal, Quebec, Canada
Description: SS/Jr and LEW/Crlc were backcrossed for 5 generations, then BC5 rat was mated with LEW/Crlc to produce the desired congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,710,576 - 26,538,225RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01812,441,876 - 27,733,166RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01812,230,011 - 27,443,258RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41813,071,222 - 27,421,017RGD_MAPPER_PIPELINERGSC3.4





Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "SS.LEW-(D18Chm90-D18Chm4)/Ayd" (RS:0003678)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure

References

References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. alpha-Kinase 2 is a novel candidate gene for inherited hypertension in Dahl rats. Chauvet C, etal., J Hypertens. 2011 Jul;29(7):1320-6. doi: 10.1097/HJH.0b013e32834705e4.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D18Chm90)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,710,576 - 12,710,797 (+)MAPPER
Rnor_6.01812,441,876 - 12,442,094NCBI
Rnor_5.01812,230,011 - 12,230,229UniSTS
RGSC_v3.41813,071,222 - 13,071,440UniSTS
Celera1812,700,045 - 12,700,263UniSTS
Cytogenetic Map18 RGD

Flank 2 / 1 (D18Chm4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21826,538,058 - 26,538,225 (+)MAPPER
Rnor_6.01827,733,000 - 27,733,166NCBI
Rnor_5.01827,443,092 - 27,443,258UniSTS
RGSC_v3.41827,420,851 - 27,421,017UniSTS
Celera1826,274,734 - 26,274,919UniSTS
Cytogenetic Map18p12UniSTS

Additional Information