Strain Report - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SS.MNS-(D2Rat155-D2Chm419)/Ayd

Symbol: SS.MNS-(D2Rat155-D2Chm419)/Ayd
Strain: SS.MNS-(D2Rat155-D2Chm419)
Substrain: Ayd
RGD ID: 7421645
Citation ID: RRID:RGD_7421645
Ontology ID: RS:0003593
Previously known as: C2S.M19; DSS.MNS-(D2Rat155-D2Chm419)/Lt; SS.MNS-(D2Rat155-D2Chm419)/Ayd
Type: congenic
Source: Centre Hospitalier de Universite de Montreal (CRCHUM), Quebec, Canada
Origin: Congenic substrain created by backcrossing congenic strain SS.MNS-(D2Chm25-D2Mit14)/Ayd strain into the parental Dahl Salt-sensitive (SS/Jr) strain, the F2 rats were genotyped with markers that resided in the region of interest, heterozygous rat was then backcrossed to SS/Jr rat to duplicate the fragment.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22172,982,062 - 172,982,266RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02186,889,035 - 186,889,238RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02206,293,779 - 206,293,982RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42179,581,946 - 179,582,150RGD_MAPPER_PIPELINERGSC3.4

Disease Annotations     Click to see Annotation Detail View
Hypotension  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure


References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. Cardiac pathways distinguish two epistatic modules enacting BP quantitative trait loci and candidate gene analysis. Chauvet C, etal., Hypertens Res. 2009 Jul;32(7):631-7. doi: 10.1038/hr.2009.70. Epub 2009 May 22.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D2Rat155)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,982,062 - 172,982,266 (+)MAPPER
Rnor_6.02186,889,035 - 186,889,238NCBI
Rnor_5.02206,293,779 - 206,293,982UniSTS
RGSC_v3.42179,581,946 - 179,582,150RGD
RGSC_v3.42179,581,947 - 179,582,150UniSTS
RGSC_v3.12179,532,053 - 179,532,256RGD
Celera2166,933,605 - 166,933,808UniSTS
RH 3.4 Map21138.1RGD
RH 3.4 Map21138.1UniSTS
SHRSP x BN Map270.0898UniSTS
SHRSP x BN Map270.0898RGD
FHH x ACI Map276.5599RGD
Cytogenetic Map2q34UniSTS
Strain QTL Data
Symbol Name Trait
Bp363 Blood pressure QTL 363 arterial blood pressure trait   (VT:2000000)    

Additional Information