Strain Report - Rat Genome Database

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Strain: SS.LEW-(D17Rat84-D17Chm17)/Ayd

Symbol: SS.LEW-(D17Rat84-D17Chm17)/Ayd
Strain: SS.LEW-(D17Rat84-D17Chm17)
Substrain: Ayd
RGD ID: 7421623
Citation ID: RRID:RGD_7421623
Ontology ID: RS:0003587
Previously known as: C17S.L9; SS.LEW-(D17Rat84-D17Chm17)/Ayd
Type: congenic
Source: Centre Hospitalier de Universite de Montreal (CRCHUM), Quebec, Canada
Origin: A segment of chromosome 17 was transferred from LEW/Crlc into the SS/Jr background, the F2 rats were genotyped with markers that resided in the region of interest, heterozygous rat was then backcrossed to SS/Jr rat to duplicate the fragment.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21723,653,184 - 23,653,323RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01721,490,950 - 21,491,085RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01723,473,207 - 23,473,342RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41729,603,712 - 29,604,237RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure


References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D17Rat84)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21723,653,184 - 23,653,323 (+)MAPPER
Rnor_6.01721,490,950 - 21,491,085NCBI
Rnor_5.01723,473,207 - 23,473,342UniSTS
RGSC_v3.41729,604,089 - 29,604,224UniSTS
RGSC_v3.41729,603,712 - 29,604,237RGD
RGSC_v3.11729,606,930 - 29,607,065RGD
Celera1723,324,112 - 23,324,238UniSTS
RH 3.4 Map17280.1RGD
RH 3.4 Map17280.1UniSTS
RH 2.0 Map17199.7RGD
SHRSP x BN Map1717.2899RGD
FHH x ACI Map1722.3299RGD
Cytogenetic Map17p12UniSTS
Strain QTL Data
Symbol Name Trait
Bp370 Blood pressure QTL 370 arterial blood pressure trait   (VT:2000000)    

Additional Information