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Strain Registration

Strain: SS.LEW-(D16Chm48-D16Chm60)/Ayd

Symbol: SS.LEW-(D16Chm48-D16Chm60)/Ayd
Strain: SS.LEW-(D16Chm48-D16Chm60)
Substrain: Ayd
RGD ID: 7421612
Citation ID: RRID:RGD_7421612
Ontology ID: RS:0003583
Also Known As: C16S.L7; SS.LEW-(D16Chm48-D16Chm60)/Ayd
Type: congenic
Available Source: Not Available
Origination: Centre Hospitalier de Universite de Montreal (CRCHUM), Quebec, Canada
Description: A segment of chromosome 16 was transferred from LEW/Crlc into the SS/Jr background, the F2 rats were genotyped with markers that resided in the region of interest, heterozygous rat was then backcrossed to SS/Jr rat to duplicate the fragment.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,080,416 - 3,080,679RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0163,524,957 - 3,525,217RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0162,471,921 - 3,491,557RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4162,116,303 - 3,165,043RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure

References

References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. Combining distinctive and novel loci doubles BP reduction, reverses diastolic dysfunction and mitigates LV hypertrophy. Crespo K, etal., J Hypertens. 2013 May;31(5):927-35. doi: 10.1097/HJH.0b013e32835edc7e.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D16Chm48)
Rat AssemblyChrPosition (strand)Source
Rnor_5.0162,471,921 - 2,472,139NCBI
RGSC_v3.4162,116,303 - 2,116,534UniSTS
Celera162,023,329 - 2,023,560UniSTS
Cytogenetic Map16p16UniSTS

Flank 2 / 1 (D16Chm60)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2163,080,416 - 3,080,679 (+)MAPPER
Rnor_6.0163,524,957 - 3,525,217NCBI
Rnor_5.0163,491,297 - 3,491,557UniSTS
RGSC_v3.4163,164,783 - 3,165,043UniSTS
Celera163,029,112 - 3,029,372UniSTS
Cytogenetic Map16p16UniSTS

Additional Information