Strain Report - Rat Genome Database

Name: SS.LEW-( D1Rat320-D1Mgh32 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.LEW-(D1Rat320-D1Mgh32)/Ayd

Symbol:

SS.LEW-(D1Rat320-D1Mgh32)/Ayd

Strain:

SS.LEW-(D1Rat320-D1Mgh32)

Substrain:

Ayd

RGD ID:

7421603

Citation ID:

RRID:RGD_7421603

Ontology ID:

RS:0003579

Previously known as:

C1S.L2; SS.LEW-(D1Rat320-D1Mgh32)/Ayd

Type:

congenic

Source:

Centre Hospitalier de Universite de Montreal (CRCHUM), Quebec, Canada

Origin:

A segment of chromosome 1 was transferred from LEW/Crlc into the SS/Jr background, the F₂ rats were genotyped with markers that resided in the region of interest, heterozygous rat was then backcrossed to SS/Jr rat to duplicate the fragment.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	118,608,292 - 241,799,120	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	1	125,875,758 - 262,433,692	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	1	126,980,427 - 269,885,827	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	1	119,536,684 - 247,882,384	RGD_MAPPER_PIPELINE	RGSC3.4

Congenic Strains

SS.LEW-(D1Rat320-D1Mgh32)(D10Rat194-D10Chm243)(D10Chm10-D10Rat11)/Ayd

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased mean systemic arterial blood pressure (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Download data table

View expanded data table

Clinical Measurement

mean arterial blood pressure

References

References - curated

#	Reference Title	Reference Citation
1.	Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci.	Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Rat320)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	118,608,292 - 118,608,521 (+)	MAPPER
Rnor_6.0	1	125,875,758 - 125,875,986	NCBI
Rnor_5.0	1	126,980,427 - 126,980,655	UniSTS
RGSC_v3.4	1	119,536,684 - 119,536,913	RGD
RGSC_v3.4	1	119,536,685 - 119,536,913	UniSTS
RGSC_v3.1	1	119,615,027 - 119,615,256	RGD
Celera	1	110,858,672 - 110,858,874	UniSTS
FHH x ACI Map	1	56.63	RGD
FHH x ACI Map	1	56.63	UniSTS
Cytogenetic Map	1	q22	UniSTS

Flank 2 / 1 (D1Mgh32)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	241,799,011 - 241,799,120 (+)	MAPPER
Rnor_6.0	1	262,433,584 - 262,433,692	NCBI
Rnor_6.0	1	262,237,344 - 262,237,452	NCBI
Rnor_5.0	1	269,885,719 - 269,885,827	UniSTS
Rnor_5.0	1	269,689,479 - 269,689,587	UniSTS
RGSC_v3.4	1	247,882,276 - 247,882,384	UniSTS
RGSC_v3.4	1	247,882,275 - 247,882,384	RGD
RGSC_v3.1	1	247,996,750 - 247,996,859	RGD
Celera	1	237,630,552 - 237,630,660	UniSTS
Cytogenetic Map	1	q54	UniSTS

Strain QTL Data

Symbol	Name	Trait
Bp362	Blood pressure QTL 362	arterial blood pressure trait (VT:2000000)

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.LEW-(D1Rat320-D1Mgh32)/Ayd

Mammalian Phenotype

Related Phenotype Data for Term "SS.LEW-(D1Rat320-D1Mgh32)/Ayd" (RS:0003579)