Strain Report - Rat Genome Database

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Strain: SS.LEW-(D1Rat320-D1Mgh32)/Ayd

Symbol: SS.LEW-(D1Rat320-D1Mgh32)/Ayd
Strain: SS.LEW-(D1Rat320-D1Mgh32)
Substrain: Ayd
RGD ID: 7421603
Citation ID: RRID:RGD_7421603
Ontology ID: RS:0003579
Previously known as: C1S.L2; SS.LEW-(D1Rat320-D1Mgh32)/Ayd
Type: congenic
Source: Centre Hospitalier de Universite de Montreal (CRCHUM), Quebec, Canada
Origin: A segment of chromosome 1 was transferred from LEW/Crlc into the SS/Jr background, the F2 rats were genotyped with markers that resided in the region of interest, heterozygous rat was then backcrossed to SS/Jr rat to duplicate the fragment.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21118,608,292 - 241,799,120RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01125,875,758 - 262,433,692RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01126,980,427 - 269,885,827RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41119,536,684 - 247,882,384RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure


References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D1Rat320)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21118,608,292 - 118,608,521 (+)MAPPER
Rnor_6.01125,875,758 - 125,875,986NCBI
Rnor_5.01126,980,427 - 126,980,655UniSTS
RGSC_v3.41119,536,684 - 119,536,913RGD
RGSC_v3.41119,536,685 - 119,536,913UniSTS
RGSC_v3.11119,615,027 - 119,615,256RGD
Celera1110,858,672 - 110,858,874UniSTS
FHH x ACI Map156.63RGD
FHH x ACI Map156.63UniSTS
Cytogenetic Map1q22UniSTS

Flank 2 / 1 (D1Mgh32)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21241,799,011 - 241,799,120 (+)MAPPER
Rnor_6.01262,433,584 - 262,433,692NCBI
Rnor_6.01262,237,344 - 262,237,452NCBI
Rnor_5.01269,885,719 - 269,885,827UniSTS
Rnor_5.01269,689,479 - 269,689,587UniSTS
RGSC_v3.41247,882,276 - 247,882,384UniSTS
RGSC_v3.41247,882,275 - 247,882,384RGD
RGSC_v3.11247,996,750 - 247,996,859RGD
Celera1237,630,552 - 237,630,660UniSTS
Cytogenetic Map1q54UniSTS
Strain QTL Data
Symbol Name Trait
Bp362 Blood pressure QTL 362 arterial blood pressure trait   (VT:2000000)    

Additional Information