Strain Report - Rat Genome Database

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Strain: SS.LEW-(D1Chm64-D1Rat19)/Ayd

Symbol: SS.LEW-(D1Chm64-D1Rat19)/Ayd
Strain: SS.LEW-(D1Chm64-D1Rat19)
Substrain: Ayd
RGD ID: 7421599
Citation ID: RRID:RGD_7421599
Ontology ID: RS:0003578
Also Known As: C1S.L4; SS.LEW-(D1Chm64-D1Rat19)/Ayd
Type: congenic
Available Source: Not Available
Origination: Centre Hospitalier de Universite de Montreal (CRCHUM), Quebec, Canada
Description: A segment of chromosome 1 was transferred from LEW/Crlc into the SS/Jr background, the F2 rats were genotyped with markers that resided in the region of interest, heterozygous rat was then backcrossed to SS/Jr rat to duplicate the fragment.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2149,393,172 - 49,393,289RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0149,578,577 - 49,578,693RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0150,173,150 - 50,173,266RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4143,872,710 - 43,872,827RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure


References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 2 / 1 (D1Rat19)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2149,393,172 - 49,393,289 (+)MAPPER
Rnor_6.0149,578,577 - 49,578,693NCBI
Rnor_5.0150,173,150 - 50,173,266UniSTS
RGSC_v3.4143,872,710 - 43,872,827RGD
RGSC_v3.4143,872,711 - 43,872,827UniSTS
RGSC_v3.1143,875,655 - 43,875,772RGD
Celera145,177,968 - 45,178,100UniSTS
RH 3.4 Map1573.5RGD
RH 3.4 Map1573.5UniSTS
SHRSP x BN Map123.8UniSTS
SHRSP x BN Map123.8RGD
Cytogenetic Map1q11UniSTS
Strain QTL Data
Symbol Name Trait
Bp360 Blood pressure QTL 360 arterial blood pressure trait   (VT:2000000)    

Additional Information