Strain Report - Rat Genome Database

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Strain: SS.SR-(D17Rat24-rs106534785)/Opaz

Symbol: SS.SR-(D17Rat24-rs106534785)/Opaz
Strain: SS.SR-(D17Rat24-rs106534785)
Substrain: Opaz
RGD ID: 7401201
Citation ID: RRID:RRRC_00615
Ontology ID: RS:0003564
Also Known As: SS.SR-(D17Rat24-rs106534785)/Opaz; S.R17A; SS.SR-(D17Rat24-SNP2801949)/Opaz
Type: congenic
Available Source: Rat Resource and Research Center
Origination: Whitaker Cardiovascular Institute, Boston University School of Medicine, Boston, Massachusetts.
Description: Congenic strain which was generated using the speed congenic strategy by backcrossing SS/JrHsd and SR/JrHsd parental strains
Last Known Status: Cryopreserved Sperm (as of 2019-02-05)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21749,567,911 - 49,568,080RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01752,424,553 - 63,306,062RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01750,489,557 - 65,074,022RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41757,724,628 - 71,942,842RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View


References

References - curated
# Reference Title Reference Citation
1. Dahl (S x R) rat congenic strain analysis confirms and defines a chromosome 17 spatial navigation quantitative trait locus to <10 Mbp. Herrera VL, etal., PLoS One. 2013;8(2):e58280. doi: 10.1371/journal.pone.0058280. Epub 2013 Feb 28.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D17Rat24)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21749,567,911 - 49,568,080 (+)MAPPER
Rnor_6.01752,424,553 - 52,424,721NCBI
Rnor_5.01750,489,557 - 50,489,725UniSTS
RGSC_v3.41757,727,026 - 57,727,194UniSTS
RGSC_v3.41757,724,764 - 57,724,932UniSTS
RGSC_v3.41757,724,628 - 57,724,943RGD
RGSC_v3.11757,729,867 - 57,730,035RGD
Celera1745,626,649 - 45,626,817UniSTS
RH 3.4 Map17510.39UniSTS
RH 3.4 Map17510.39RGD
RH 2.0 Map17440.5RGD
SHRSP x BN Map1730.3699RGD
FHH x ACI Map1735.5899RGD
Cytogenetic Map17q12.1UniSTS

Flank 2 / 1 (rs106534785)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,306,062 - 63,306,062RGD
Rnor_5.01765,074,022 - 65,074,022RGD
RGSC_v3.41771,942,842 - 71,942,842RGD
Celera1759,430,578 - 59,430,578RGD

Additional Information

Database Acc Id Source(s)
RRRC RRRC:00615 RGD