Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: DA.E3-(D4Mit16-D4Mgh11)/Rhd

Symbol: DA.E3-(D4Mit16-D4Mgh11)/Rhd
Strain: DA.E3-(D4Mit16-D4Mgh11)
Substrain: Rhd
RGD ID: 737872
Citation ID: RRID:RGD_737872
Ontology ID: RS:0000206
Previously known as: DA.E3-(D4Mit16-D4Mgh11)/Rhd; DA.Pia7
Type: congenic
Source: Section for Medical Inflammation Research, Lund University, Lund, Sweden.
Origin: This congenic strain was obtained by the conventional backcross breeding to the parental DA strain with the negative selection of all known Pia QTLs and positive selection of microsatellite markers.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24128,289,450 - 167,139,601RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.04127,777,294 - 168,047,091RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04192,286,223 - 230,565,226RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44130,228,504 - 171,204,531RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Identification and isolation of dominant susceptibility loci for pristane-induced arthritis. Olofsson P, etal., J Immunol 2003 Jul 1;171(1):407-16.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Mit16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24128,289,450 - 128,289,560 (+)MAPPER
Rnor_6.04127,777,294 - 127,777,403NCBI
Rnor_5.04192,286,223 - 192,286,332UniSTS
RGSC_v3.44130,228,505 - 130,228,614UniSTS
RGSC_v3.44130,228,504 - 130,228,614RGD
RGSC_v3.14130,473,346 - 130,473,455RGD
Celera4117,183,835 - 117,183,944UniSTS
RH 3.4 Map4773.8RGD
RH 3.4 Map4773.8UniSTS
RH 2.0 Map4857.2RGD
SHRSP x BN Map456.66RGD
FHH x ACI Map475.85RGD
Cytogenetic Map4q34UniSTS

Flank 2 / 1 (D4Mgh11)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24167,139,447 - 167,139,601 (+)MAPPER
Rnor_6.04168,046,938 - 168,047,091NCBI
Rnor_5.04230,565,073 - 230,565,226UniSTS
RGSC_v3.44171,204,377 - 171,204,531RGD
RGSC_v3.44171,204,378 - 171,204,531UniSTS
RGSC_v3.14171,449,313 - 171,449,467RGD
Celera4155,742,437 - 155,742,588UniSTS
RH 3.4 Map41015.5UniSTS
RH 3.4 Map41015.5RGD
RH 2.0 Map41078.1RGD
SHRSP x BN Map487.2499RGD
FHH x ACI Map4107.8999RGD
Cytogenetic Map4 RGD
Strain QTL Data
Symbol Name Trait
Pia23 Pristane induced arthritis QTL 23 joint integrity trait   (VT:0010548)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics Has an E3 allele of Pia7 QTL which reduces the arthritis severity by approximately 50%. 631850