Strain Report - Rat Genome Database

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Strain: DA.E3-(D4Mit16-D4Mgh11)/Rhd

Symbol: DA.E3-(D4Mit16-D4Mgh11)/Rhd
Strain: DA.E3-(D4Mit16-D4Mgh11)
Substrain: Rhd
RGD ID: 737872
Citation ID: RRID:RGD_737872
Ontology ID: RS:0000206
Previously known as: DA.E3-(D4Mit16-D4Mgh11)/Rhd; DA.Pia7
Type: congenic
Source: Section for Medical Inflammation Research, Lund University, Lund, Sweden.
Origin: This congenic strain was obtained by the conventional backcross breeding to the parental DA strain with the negative selection of all known Pia QTLs and positive selection of microsatellite markers.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24128,289,450 - 167,139,601RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.04127,777,294 - 168,047,091RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04192,286,223 - 230,565,226RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44130,228,504 - 171,204,531RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. Identification and isolation of dominant susceptibility loci for pristane-induced arthritis. Olofsson P, etal., J Immunol 2003 Jul 1;171(1):407-16.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D4Mit16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24128,289,450 - 128,289,560 (+)MAPPER
Rnor_6.04127,777,294 - 127,777,403NCBI
Rnor_5.04192,286,223 - 192,286,332UniSTS
RGSC_v3.44130,228,505 - 130,228,614UniSTS
RGSC_v3.44130,228,504 - 130,228,614RGD
RGSC_v3.14130,473,346 - 130,473,455RGD
Celera4117,183,835 - 117,183,944UniSTS
RH 3.4 Map4773.8RGD
RH 3.4 Map4773.8UniSTS
RH 2.0 Map4857.2RGD
SHRSP x BN Map456.66RGD
FHH x ACI Map475.85RGD
Cytogenetic Map4q34UniSTS

Flank 2 / 1 (D4Mgh11)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24167,139,447 - 167,139,601 (+)MAPPER
Rnor_6.04168,046,938 - 168,047,091NCBI
Rnor_5.04230,565,073 - 230,565,226UniSTS
RGSC_v3.44171,204,377 - 171,204,531RGD
RGSC_v3.44171,204,378 - 171,204,531UniSTS
RGSC_v3.14171,449,313 - 171,449,467RGD
Celera4155,742,437 - 155,742,588UniSTS
RH 3.4 Map41015.5UniSTS
RH 3.4 Map41015.5RGD
RH 2.0 Map41078.1RGD
SHRSP x BN Map487.2499RGD
FHH x ACI Map4107.8999RGD
Cytogenetic Map4 RGD
Strain QTL Data
Symbol Name Trait
Pia23 Pristane induced arthritis QTL 23 joint integrity trait   (VT:0010548)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics Has an E3 allele of Pia7 QTL which reduces the arthritis severity by approximately 50%. 631850