Strain Report - Rat Genome Database

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Strain: DA.E3-(D20Wox3-D20Mgh4)/Rhd

Symbol: DA.E3-(D20Wox3-D20Mgh4)/Rhd
Strain: DA.E3-(D20Wox3-D20Mgh4)
Substrain: Rhd
RGD ID: 737870
Citation ID: RRID:RGD_737870
Ontology ID: RS:0000205
Also Known As: DA.Pia1; DA.E3-(D20Wox3-D20Mgh4)/Rhd
Type: congenic
Available Source: Not Available
Origination: Section for Medical Inflammation Research, Lund University, Lund, Sweden.
Description: A fragment containing MHC region was introduced in DA by marker-assisted breeding and verified as pure congenic line after six generations of backcross to DA.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,621,656 - 6,691,706RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0204,855,475 - 5,875,448RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0206,935,875 - 7,910,747RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4203,660,646 - 6,880,472RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Identification and isolation of dominant susceptibility loci for pristane-induced arthritis. Olofsson P, etal., J Immunol 2003 Jul 1;171(1):407-16.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D20Wox3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,621,656 - 3,621,771 (+)MAPPER
mRatBN7.2203,621,656 - 3,621,771 (-)MAPPER
Rnor_6.0205,192,240 - 5,192,354NCBI
Rnor_6.0204,855,475 - 4,855,589NCBI
Rnor_5.0206,935,875 - 6,935,989UniSTS
RGSC_v3.4203,660,646 - 3,660,760UniSTS
RGSC_v3.1203,660,872 - 3,660,987RGD
Celera204,403,718 - 4,403,832UniSTS
Cytogenetic Map20p12UniSTS

Flank 2 / 1 (D20Mgh4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,691,596 - 6,691,706 (+)MAPPER
Rnor_6.0205,875,339 - 5,875,448NCBI
Rnor_5.0207,910,638 - 7,910,747UniSTS
RGSC_v3.4206,880,363 - 6,880,472UniSTS
RGSC_v3.4206,880,362 - 6,880,471RGD
RGSC_v3.1206,880,589 - 6,880,698RGD
Celera208,247,548 - 8,247,657UniSTS
RH 3.4 Map2077.5UniSTS
RH 3.4 Map2077.5RGD
RH 2.0 Map2097.1RGD
Strain QTL Data
Symbol Name Trait
Pia21 Pristane induced arthritis QTL 21 joint integrity trait   (VT:0010548)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics The MHC region in this congenic strain is responsible for the regulation of chronic arthritis. 631850