Strain Report - Rat Genome Database

Name: SS.SR-( D13Mit9-D13Mit1 )/Jr
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.SR-(D13Mit9-D13Mit1)/Jr

Symbol:

SS.SR-(D13Mit9-D13Mit1)/Jr

Strain:

SS.SR-(D13Mit9-D13Mit1)/Jr

Substrain:

RGD ID:

737864

Citation ID:

RRID:RGD_737864

Ontology ID:

RS:0000914

Previously known as:

SS.SR-(D13Mit9-D13Mit1)/Jr; S.R-Ren; SR/JrUcsf-Ren

Type:

congenic

Source:

J.P.Rapp, Dept. Physiol. & Molecular Med, Medical College of Ohio, P.O. Box 10008, Toledo, OH 43699-0008, USA

Origin:

Congenic strain developed by introgressing SR/Jr renin gene into the SS/Jr strain.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	5,994,668 - 53,050,594	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	13	9,016,742 - 58,537,177	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	13	14,281,836 - 63,533,335	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	13	25,430,110 - 55,033,994	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hypotension (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased systemic arterial blood pressure (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

systolic blood pressure

diastolic blood pressure

heart weight to body weight ratio

References

References - curated

#	Reference Title	Reference Citation
1.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
2.	Effects of renin gene transfer on blood pressure and renin gene expression in a congenic strain of Dahl salt-resistant rats.	St. Lezin EM, etal., J Clin Invest 1996 Jan 15;97(2):522-7
3.	Interval mapping and congenic strains for a blood pressure QTL on rat chromosome 13.	Zhang QY, etal., Mamm Genome 1997 Sep;8(9):636-41

Region

Position Markers

Flank 1 / 1 (D13Mit9)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	53,050,434 - 53,050,594 (+)	MAPPER
Rnor_6.0	13	58,537,018 - 58,537,177	NCBI
Rnor_5.0	13	63,533,176 - 63,533,335	UniSTS
RGSC_v3.4	13	55,033,834 - 55,033,994	RGD
RGSC_v3.4	13	55,033,835 - 55,033,994	UniSTS
RGSC_v3.1	13	55,047,894 - 55,048,384	RGD
Celera	13	53,246,988 - 53,247,147	UniSTS

Flank 2 / 1 (D13Mit1)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	5,994,668 - 5,994,833 (+)	MAPPER
Rnor_6.0	13	9,016,742 - 9,016,906	NCBI
Rnor_5.0	13	14,281,836 - 14,282,000	UniSTS
RGSC_v3.4	13	25,430,112 - 25,430,276	UniSTS
RGSC_v3.4	13	25,430,110 - 25,430,276	RGD
RGSC_v3.1	12	44,201,730 - 44,202,014	RGD
Celera	13	6,931,166 - 6,931,330	UniSTS
SHRSP x BN Map	13	0.0	UniSTS
SHRSP x BN Map	13	0.0	RGD
FHH x ACI Map	13	0.0	RGD
Cytogenetic Map	13		RGD

Strain QTL Data

Symbol	Name	Trait
Bp159	Blood pressure QTL 159	arterial blood pressure trait (VT:2000000)

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.SR-(D13Mit9-D13Mit1)/Jr

Mammalian Phenotype

Related Phenotype Data for Term "SS.SR-(D13Mit9-D13Mit1)/Jr" (RS:0000914)