Strain Report - Rat Genome Database

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Strain: DA.PVG.1AV1-(D4Rat63-D4Rat203)

Symbol: DA.PVG.1AV1-(D4Rat63-D4Rat203)
Strain: DA.PVG.1AV1-(D4Rat63-D4Rat203)
RGD ID: 737861
Citation ID: RRID:RGD_737861
Ontology ID: RS:0000229
Previously known as: DA.C4R3[PVG]; DA.PVG.1AV1 chromosome 4 R3subcongenic; DA.PVG.1AV1-(D4Rat63-D4Rat203)
Type: congenic
Source: Center for Molecular Medicine, Karolinska Institute, Stockholm, Sweden
Origin: Congenic substrain derived from marker assisted selection for PVG.1AV1 chromsome 4 alleles on the DA recipient strain.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24153,274,175 - 158,112,799RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.04152,598,827 - 157,826,751RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04219,683,260 - 224,843,794RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44156,442,644 - 161,435,775RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References


Region

Position Markers

Flank 1 / 1 (D4Rat63)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24153,274,175 - 153,274,330 (+)MAPPER
Rnor_6.04152,598,827 - 152,598,981NCBI
Rnor_5.04219,683,260 - 219,683,414UniSTS
RGSC_v3.44156,442,645 - 156,442,799UniSTS
RGSC_v3.44156,442,644 - 156,442,799RGD
RGSC_v3.14156,687,486 - 156,687,640RGD
Celera4142,126,200 - 142,126,354UniSTS
RH 3.4 Map4981.1RGD
RH 3.4 Map4981.1UniSTS
RH 2.0 Map4972.6RGD
SHRSP x BN Map477.0299RGD

Flank 2 / 1 (D4Rat203)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24158,112,655 - 158,112,799 (+)MAPPER
Rnor_6.04157,826,610 - 157,826,751NCBI
Rnor_5.04224,843,653 - 224,843,794UniSTS
RGSC_v3.44161,435,633 - 161,435,775RGD
RGSC_v3.44161,435,634 - 161,435,775UniSTS
RGSC_v3.14161,680,570 - 161,680,711RGD
Celera4146,848,905 - 146,849,046UniSTS
RH 3.4 Map41005.8UniSTS
RH 3.4 Map41005.8RGD
SHRSP x BN Map483.82UniSTS
SHRSP x BN Map483.82RGD
Cytogenetic Map4q42UniSTS
Strain QTL Data
Symbol Name Trait
Oia8 Oil induced arthritis QTL 8 joint integrity trait   (VT:0010548)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics QTLs Oia2, Cia13, and Pia7 are contained within subcongenic strain DA.PVG.1AV1-(D4Rat63-D4Rat203). 629560
strain_drgs_chems These animals have reduced susceptibility to experimentally induced arthritis (induced by collagen, pristane, squalene and other adjuvants) compared to the DA recipient strain having no PVG chromosome 4 alleles. 629560
strain_life_disease These animals have reduced susceptibility to experimentally induced arthritis compared to the DA recipient strain having no PVG chromosome 4 alleles. 629560

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-27 DA.PVG.1AV1-(D4Rat63-D4Rat203   DA.PVG.1AV1-(D4Rat63-D4Rat203   Name updated 68913 APPROVED
2013-08-27 DA.PVG.1AV1-(D4Rat63-D4Rat203   DA.PVG.1AV1-(D4Rat63-D4Rat203   Name updated 68913 APPROVED