Strain Report - Rat Genome Database

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Strain: DA.PVG.1AV1-(D4Rat155-Spr)

Symbol: DA.PVG.1AV1-(D4Rat155-Spr)
Strain: DA.PVG.1AV1-(D4Rat155-Spr)
RGD ID: 737858
Citation ID: RRID:RGD_737858
Ontology ID: RS:0000228
Previously known as: DA.PVG.1AV1-(D4Rat155-Spr); DA.C4R1[PVG]; DA.PVG.1AV1 chromosome 4 R1 subcongenic
Type: congenic
Source: Center for Molecular Medicine, Karolinska Institute, Stockholm, Sweden
Origin: Congenic substrain derived from marker assisted selection for PVG.1AV1 chromsome 4 alleles on the DA recipient strain.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2449,524,674 - 117,676,292RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0448,053,950 - 116,916,073RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0447,848,402 - 181,496,612RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44119,365,578 - 119,369,308RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
1. Backdahl L, etal., Arthritis Rheum 2003 Feb;48(2):551-9.
2. RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Rat155)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2449,524,674 - 49,524,880 (+)MAPPER
Rnor_6.0448,053,950 - 48,054,155NCBI
Rnor_5.0447,848,402 - 47,848,607UniSTS
Celera444,734,838 - 44,735,043UniSTS
RH 3.4 Map4300.42UniSTS
RH 3.4 Map4300.42RGD
RH 2.0 Map4355.3RGD
SHRSP x BN Map429.49RGD

Flank 2 / 1 (Spr)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24117,671,948 - 117,676,292 (-)NCBI
mRatBN7.2 Ensembl4117,671,949 - 117,675,678 (-)Ensembl
Rnor_6.04116,912,343 - 116,916,073 (-)NCBI
Rnor_6.0 Ensembl4116,912,351 - 116,916,236 (-)Ensembl
Rnor_5.04181,492,882 - 181,496,612 (-)NCBI
RGSC_v3.44119,365,578 - 119,369,308 (-)NCBI
RGSC_v3.14119,610,075 - 119,613,765 (-)NCBI
Celera4106,655,853 - 106,659,586 (-)NCBI
Cytogenetic Map4q34NCBI

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics QTLs Aia2 and Pia2 are contained within subcongenic strain DA.PVG.1AV1-(D4Mgh17-D4Rat56) 629560
strain_drgs_chems Susceptible to collagen or pristane induction of arthritis, susceptibility is similar to that of DA recipient strain having no PVG chromosome 4 alleles. 629560
strain_life_disease Susceptible to experimentally induced arthritis, susceptibility is similar to that of the DA recipient strain having no PVG chromosome 4 alleles. 629560

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-27 DA.PVG.1AV1-(D4Rat155-Spr   DA.PVG.1AV1-(D4Rat155-Spr   Name updated 68913 APPROVED
2013-08-27 DA.PVG.1AV1-(D4Rat155-Spr   DA.PVG.1AV1-(D4Rat155-Spr   Name updated 68913 APPROVED