Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: DA.F344-(D7Rat22-D7Rat15)/Nsi

Symbol: DA.F344-(D7Rat22-D7Rat15)/Nsi
Strain: DA.F344-(D7Rat22-D7Rat15
Substrain: Nsi
RGD ID: 7364981
Citation ID: RRID:RRRC_00680
Ontology ID: RS:0003548
Previously known as: DA.F344-(D7Rat22-D7Rat15)/Arb; DA.F344(Cia4a); DA.F344-(D7Rat22-D7Rat15)/Nsi
Type: congenic
Source: The National Institute of Arthritis and Musculoskeletal and Skin Diseases, Bethesda, Maryland, Rat Resource and Research Center
Origin: Congenic strain created by backcrossing F344/NHsd into DA/BklArbNsi 11 times then brother-sister mating to maintain in the homozygous state
Coat Color: agouti
Last Known Status: Cryopreserved Sperm (as of 2019-02-19)
Research Usage arthritis/autoimmunity studies
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27101,772,987 - 101,773,158RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.07111,043,360 - 111,043,530RGD_MAPPER_PIPELINERnor6.0
Rnor_5.07110,975,825 - 110,975,995RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4776,615,341 - 107,428,439RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by the Rat Resource & Research Center Personal Communication with Rat Resource & Research Center
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Rat22)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4776,615,342 - 76,615,501UniSTS
RGSC_v3.4776,615,341 - 76,615,501RGD
RGSC_v3.1776,636,071 - 76,636,231RGD
Celera769,120,095 - 69,120,250UniSTS
RH 3.4 Map7620.3RGD
RH 3.4 Map7620.3UniSTS
RH 2.0 Map7478.6RGD
SHRSP x BN Map745.53RGD
FHH x ACI Map736.75RGD
Cytogenetic Map7q22-q31UniSTS

Flank 2 / 1 (D7Rat15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27101,772,987 - 101,773,158 (+)MAPPER
Rnor_6.07111,043,360 - 111,043,530NCBI
Rnor_5.07110,975,825 - 110,975,995UniSTS
RGSC_v3.47107,428,268 - 107,428,439RGD
RGSC_v3.47107,428,269 - 107,428,439UniSTS
RGSC_v3.17107,462,499 - 107,462,669RGD
Celera798,242,639 - 98,242,803UniSTS
RH 3.4 Map7694.6UniSTS
RH 3.4 Map7694.6RGD
RH 2.0 Map7536.9RGD
SHRSP x BN Map757.9199RGD
FHH x ACI Map748.9699RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other F344 alleles between: D7Rat22 and D7Rat15. DA alleles at: D7Mit25 and D7Rat88. 2292495
Database Acc Id Source(s)
RRRC RRRC:00680 RGD