Strain Report - Rat Genome Database

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Strain: SS.LEW-(D1Rat45-D1Mco41)/Jr

Symbol: SS.LEW-(D1Rat45-D1Mco41)/Jr
Strain: SS.LEW-(D1Rat45-D1Mco41)
Substrain: Jr
RGD ID: 734482
Citation ID: RRID:RGD_734482
Ontology ID: RS:0000874
Alleles: Sa
Previously known as: Chr1 X 7; SS.LEW-(D1Rat45-D1Mco41)/Jr
Type: congenic
Source: Medical College of Ohio, Toledo, Ohio, USA
Origin: This is a congenic substrain derived from SS.LEW-(D1Mco2-D1Mco35)/Jr. A 43 cM fragment of LEW chr 1 was introgressed into SS background.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,506,580 - 221,920,075RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01153,834,077 - 242,177,304RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01160,138,797 - 249,451,438RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41146,189,650 - 227,693,454RGD_MAPPER_PIPELINERGSC3.4


References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Localization of a blood pressure QTL on rat chromosome 1 using dahl rat congenic strains Saad Y, etal., Physiol Genomics 1999 Nov 11;1(3):119-25.


Position Markers

Flank 1 / 1 (D1Rat45)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,506,580 - 143,506,731 (+)MAPPER
Rnor_6.01153,834,077 - 153,834,227NCBI
Rnor_5.01160,138,797 - 160,138,947UniSTS
RGSC_v3.41146,189,689 - 146,189,839UniSTS
RGSC_v3.41146,189,650 - 146,189,942RGD
RGSC_v3.11146,268,095 - 146,268,245RGD
Celera1141,759,645 - 141,759,815UniSTS
RH 3.4 Map11116.6RGD
RH 3.4 Map11116.6UniSTS
RH 2.0 Map1730.8RGD
SHRSP x BN Map174.4799RGD

Flank 2 / 1 (D1Mco41)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21221,919,753 - 221,920,075 (+)MAPPER
Rnor_6.01242,176,983 - 242,177,304NCBI
Rnor_5.01249,451,117 - 249,451,438UniSTS
RGSC_v3.41227,693,132 - 227,693,454RGD
RGSC_v3.41227,693,133 - 227,693,454UniSTS
RGSC_v3.11227,857,155 - 227,857,477RGD
Celera1219,129,755 - 219,130,078UniSTS
Cytogenetic Map1q51UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics This congenic strain carries the Sa gene. 61514
strain_life_disease Had no significant blood pressure effect as compared to the SS rats. 61514