Strain Report - Rat Genome Database

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Strain: SS.LEW-(D5Mit9-D5Mco10)/Jr

Symbol: SS.LEW-(D5Mit9-D5Mco10)/Jr
Strain: SS.LEW-(D5Mit9-D5Mco10)
Substrain: Jr
RGD ID: 734474
Citation ID: RRID:RGD_734474
Ontology ID: RS:0000883
Also Known As: S.LEW(chr5); SS.LEW-(D5Mit9-D5Mco10)/Jr
Type: congenic
Available Source: Not Available
Origination: Medical College of Ohio, Toledo, Ohio, USA
Description: SS rats were crossed with LEW and the F1 rats were backcrossed to SS. Heterozygous rats with the chromosomal region of interest were selected and backcrossed for the next generation. This was done for eight generations and then the heterozygous animals were intercrossed.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2560,293,434 - 161,481,680RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0561,612,600 - 168,109,659RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0566,128,197 - 171,686,754RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4562,555,131 - 168,174,140RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
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References

References - curated
# Reference Title Reference Citation
1. Genome scan and congenic strains for blood pressure QTL using Dahl salt-sensitive rats. Garrett MR, etal., Genome Res 1998 Jul;8(7):711-23
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Mit9)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2560,293,434 - 60,293,557 (+)MAPPER
Rnor_6.0561,612,600 - 61,612,720NCBI
Rnor_5.0566,128,197 - 66,128,317UniSTS
RGSC_v3.4562,555,131 - 62,555,252RGD
RGSC_v3.4562,555,132 - 62,555,252UniSTS
RGSC_v3.1562,555,311 - 62,555,431RGD
Celera558,855,517 - 58,855,636UniSTS
RH 3.4 Map5384.6UniSTS
RH 3.4 Map5384.6RGD
Cytogenetic Map5q22UniSTS

Flank 2 / 1 (D5Mco10)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,481,433 - 161,481,680 (+)MAPPER
Rnor_6.05168,109,415 - 168,109,659NCBI
Rnor_5.05171,686,510 - 171,686,754UniSTS
RGSC_v3.45168,173,895 - 168,174,140RGD
RGSC_v3.45168,173,896 - 168,174,140UniSTS
RGSC_v3.15168,184,083 - 168,184,328RGD
Celera5159,733,610 - 159,733,854UniSTS
Cytogenetic Map5q36UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease The blood pressure and heart weight is lower as compared to the SS rats. 61040