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Strain Registration

Strain: SS.LEW-(D3Chm64-D3Rat17)/Ayd

Symbol: SS.LEW-(D3Chm64-D3Rat17)/Ayd
Strain: SS.LEW-(D3Chm64-D3Rat17)
Substrain: Ayd
RGD ID: 731194
Citation ID: RRID:RGD_731194
Ontology ID: RS:0000879
Also Known As: SS.LEW-(D3Chm64-D3Rat17)/Ayd; S.L.4; S.L4; C3S.L4; SS.LEW-(D3Chm63-D3Rat17)/Ayd; SS.LEW-(D3Chm63-D3Rat17)/Ayd
Type: congenic
Available Source: Not Available
Origination: Research Centre-CHUM, Montreal, Quebec, Canada
Description: A sub congenic strain derived from the progenitor strain SS.LEW-(D3Rat52-D3Rat17)/Ayd
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83141,508,991 - 141,509,147RGD_MAPPER_PIPELINE
mRatBN7.2354,740,735 - 121,056,321RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0356,217,734 - 127,023,997RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0362,850,379 - 133,513,825RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.4352,127,226 - 121,619,110RGD_MAPPER_PIPELINERGSC_v3.4





Disease Annotations     Click to see Annotation Detail View
hypertension  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. Quantitative trait loci with opposing blood pressure effects demonstrating epistasis on Dahl rat chromosome 3. Palijan A, etal., Physiol Genomics 2003 Sep 29;15(1):1-8.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D3Chm64)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2354,740,735 - 54,740,965 (+)MAPPER
Rnor_6.0356,217,734 - 56,217,961NCBI
Rnor_5.0362,850,379 - 62,850,606UniSTS
RGSC_v3.4352,127,226 - 52,127,454RGD
RGSC_v3.4352,127,227 - 52,127,454UniSTS
Celera354,300,329 - 54,300,560UniSTS
Cytogenetic Map3q21UniSTS

Flank 2 / 1 (D3Rat17)
Rat AssemblyChrPosition (strand)Source
GRCr83141,508,991 - 141,509,147 (+)Marker Load Pipeline
mRatBN7.23121,056,165 - 121,056,321 (+)MAPPER
Rnor_6.03126,575,595 - 126,575,750NCBI
Rnor_6.03127,023,842 - 127,023,997NCBI
Rnor_5.03133,062,559 - 133,062,714UniSTS
Rnor_5.03133,513,670 - 133,513,825UniSTS
RGSC_v3.43121,618,954 - 121,619,110RGD
RGSC_v3.43121,618,955 - 121,619,110UniSTS
Celera3119,839,022 - 119,839,177UniSTS
RGSC_v3.13121,524,528 - 121,524,683RGD
RH 3.4 Map31046.3RGD
RH 3.4 Map31046.3UniSTS
RH 2.0 Map3713.5RGD
SHRSP x BN Map358.5198RGD
FHH x ACI Map373.54RGD
Strain QTL Data
Symbol Name Trait
Bp152 Blood pressure QTL 152 arterial blood pressure trait   (VT:2000000)    

Additional Information