Strain Report - Rat Genome Database

Name: SS.LEW-( D10Mco15-D10Mgh1 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Strain Registration

General

Strain: SS.LEW-(D10Mco15-D10Mgh1)/Ayd

Symbol:

SS.LEW-(D10Mco15-D10Mgh1)/Ayd

Strain:

SS.LEW-(D10Mco15-D10Mgh1)

Substrain:

Ayd

RGD ID:

728396

Citation ID:

RRID:RGD_728396

Ontology ID:

RS:0000845

Previously known as:

S.LEW-D10Mco15/D10Mgh1; S.L1; SS.LEW-(D10Mco15-D10Mgh1)/Ayd

Type:

congenic

Source:

Centre Hospitalier de Universiti de Montrial, Quebec, Canada

Origin:

A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	93,995,749 - 93,995,963	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	97,308,358 - 97,308,569	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	97,028,717 - 97,028,928	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	98,392,296 - 98,392,508	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

salt-sensitive hypertension (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

mean arterial blood pressure

References

References - curated

#	Reference Title	Reference Citation
1.	Comprehensive Congenic Coverage Revealing Multiple Blood Pressure Quantitative Trait Loci on Dahl Rat Chromosome 10.	Palijan A, etal., Hypertension 2003 Oct;42(4):515-22. Epub 2003 Aug 25
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Mco15)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	93,995,749 - 93,995,963 (+)	MAPPER
Rnor_6.0	10	97,308,358 - 97,308,569	NCBI
Rnor_5.0	10	97,028,717 - 97,028,928	UniSTS
RGSC_v3.4	10	98,392,296 - 98,392,508	RGD
RGSC_v3.4	10	98,392,297 - 98,392,508	UniSTS
RGSC_v3.1	10	98,406,666 - 98,406,878	RGD
Celera	10	92,658,503 - 92,658,713	UniSTS
Cytogenetic Map	10		RGD

Flank 2 / 1 (D10Mgh1)

Rat Assembly	Chr	Position (strand)	Source
Celera	10	102,748,696 - 102,748,839	UniSTS
RH 2.0 Map	10	1407.7	RGD
Cytogenetic Map	10		RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Create Name:

Description:

Send us a Message

Strain: SS.LEW-(D10Mco15-D10Mgh1)/Ayd

Mammalian Phenotype

Related Phenotype Data for Term "SS.LEW-(D10Mco15-D10Mgh1)/Ayd" (RS:0000845)