Strain Report - Rat Genome Database

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Strain: SS.LEW-(D10Mco15-D10Mgh1)/Ayd

Symbol: SS.LEW-(D10Mco15-D10Mgh1)/Ayd
Strain: SS.LEW-(D10Mco15-D10Mgh1)
Substrain: Ayd
RGD ID: 728396
Citation ID: RRID:RGD_728396
Ontology ID: RS:0000845
Previously known as: S.LEW-D10Mco15/D10Mgh1; S.L1; SS.LEW-(D10Mco15-D10Mgh1)/Ayd
Type: congenic
Source: Centre Hospitalier de Universiti de Montrial, Quebec, Canada
Origin: A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21093,995,749 - 93,995,963RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01097,308,358 - 97,308,569RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01097,028,717 - 97,028,928RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41098,392,296 - 98,392,508RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
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Clinical Measurement
mean arterial blood pressure


References - curated
# Reference Title Reference Citation
1. Comprehensive Congenic Coverage Revealing Multiple Blood Pressure Quantitative Trait Loci on Dahl Rat Chromosome 10. Palijan A, etal., Hypertension 2003 Oct;42(4):515-22. Epub 2003 Aug 25
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D10Mco15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21093,995,749 - 93,995,963 (+)MAPPER
Rnor_6.01097,308,358 - 97,308,569NCBI
Rnor_5.01097,028,717 - 97,028,928UniSTS
RGSC_v3.41098,392,296 - 98,392,508RGD
RGSC_v3.41098,392,297 - 98,392,508UniSTS
RGSC_v3.11098,406,666 - 98,406,878RGD
Celera1092,658,503 - 92,658,713UniSTS
Cytogenetic Map10 RGD

Flank 2 / 1 (D10Mgh1)
Rat AssemblyChrPosition (strand)Source
Celera10102,748,696 - 102,748,839UniSTS
RH 2.0 Map101407.7RGD
Cytogenetic Map10 RGD

Additional Information