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Strain Registration

Strain: SS.LEW-(D10Rat55-D10Rat13)/Ayd

Symbol: SS.LEW-(D10Rat55-D10Rat13)/Ayd
Strain: SS.LEW-(D10Rat55-D10Rat13)
Substrain: Ayd
RGD ID: 728394
Citation ID: RRID:RGD_728394
Ontology ID: RS:0000854
Previously known as: SS.LEW-(D10Rat55-D10Rat13)/Ayd; S.L8; S.LEW-D10Rat55/D10Rat13; C10S.L8; SS.LEW-(D10Rat55-D10Chm10)/Ayd; SS.LEW-(D10Rat55-D10Chm10)/Ayd
Type: congenic
Source: Centre Hospitalier de Universiti de Montrial, Quebec, Canada
Origin: A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21085,160,679 - 92,699,242RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01088,140,923 - 95,967,298RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01087,933,406 - 95,701,443RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41089,167,104 - 97,152,587RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
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Clinical Measurement
mean arterial blood pressure

References

References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. Comprehensive Congenic Coverage Revealing Multiple Blood Pressure Quantitative Trait Loci on Dahl Rat Chromosome 10. Palijan A, etal., Hypertension 2003 Oct;42(4):515-22. Epub 2003 Aug 25
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat55)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,160,679 - 85,160,854 (+)MAPPER
Rnor_6.01088,140,923 - 88,141,097NCBI
Rnor_5.01087,933,406 - 87,933,580UniSTS
RGSC_v3.41089,167,105 - 89,167,279UniSTS
RGSC_v3.41089,167,104 - 89,167,279RGD
RGSC_v3.11089,181,475 - 89,181,649RGD
Celera1083,880,011 - 83,880,185UniSTS
RH 3.4 Map10859.3RGD
RH 3.4 Map10859.3UniSTS
RH 2.0 Map10968.7RGD
FHH x ACI Map1071.36RGD

Flank 2 / 1 (D10Rat13)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21092,698,959 - 92,699,242 (+)MAPPER
Rnor_6.01095,967,019 - 95,967,298NCBI
Rnor_5.01095,701,164 - 95,701,443UniSTS
RGSC_v3.41097,152,256 - 97,152,538UniSTS
RGSC_v3.41097,152,234 - 97,152,587RGD
RGSC_v3.11097,166,626 - 97,166,908RGD
Celera1091,364,444 - 91,364,676UniSTS
RH 3.4 Map101030.5RGD
RH 3.4 Map101030.5UniSTS
RH 2.0 Map101136.8RGD
SHRSP x BN Map1073.35RGD
FHH x ACI Map1076.87RGD
Cytogenetic Map10q32.1UniSTS

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-03 SS.LEW-(D10Rat55-D10Rat13)/Ayd    SS.LEW-(D10Rat55-D10Rat131)/Ayd    Symbol updated 68687 APPROVED
2012-10-03 SS.LEW-(D10Rat55-D10Rat13)/Ayd    SS.LEW-(D10Rat55-D10Rat131)/Ayd    Name updated 68913 APPROVED
2012-10-03 SS.LEW-(D10Rat55-D10Rat13)/Ayd    SS.LEW-(D10Rat55-D10Rat131)/Ayd    Symbol updated 68687 APPROVED
2012-10-03 SS.LEW-(D10Rat55-D10Rat13)/Ayd    SS.LEW-(D10Rat55-D10Rat131)/Ayd    Name updated 68913 APPROVED