Strain Report - Rat Genome Database

Name: SS.LEW-( D10Got125-D10Rat120 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.LEW-(D10Got125-D10Rat120)/Ayd

Symbol:

SS.LEW-(D10Got125-D10Rat120)/Ayd

Strain:

SS.LEW-(D10Got125-D10Rat120)

Substrain:

Ayd

RGD ID:

728393

Citation ID:

RRID:RGD_728393

Ontology ID:

RS:0000843

Previously known as:

S.LEW-D10Got125/D10Rat120; S.L14; SS.LEW-(D10Got125-D10Rat120)/Ayd

Type:

congenic

Source:

Centre Hospitalier de Universiti de Montrial, Quebec, Canada

Origin:

A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	83,212,828 - 88,132,643	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	86,168,841 - 91,270,722	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	85,965,754 - 91,041,690	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	86,983,905 - 92,373,412	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

salt-sensitive hypertension (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Comprehensive Congenic Coverage Revealing Multiple Blood Pressure Quantitative Trait Loci on Dahl Rat Chromosome 10.	Palijan A, etal., Hypertension 2003 Oct;42(4):515-22. Epub 2003 Aug 25
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Got125)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	83,212,828 - 83,213,078 (+)	MAPPER
Rnor_6.0	10	86,168,841 - 86,169,090	NCBI
Rnor_5.0	10	85,965,754 - 85,966,003	UniSTS
RGSC_v3.4	10	86,983,905 - 86,984,155	RGD
RGSC_v3.4	10	86,983,906 - 86,984,155	UniSTS
RGSC_v3.1	10	86,998,276 - 86,998,525	RGD
Celera	10	81,961,741 - 81,961,990	UniSTS
RH 3.4 Map	10	846.3	UniSTS
RH 3.4 Map	10	846.3	RGD
RH 2.0 Map	10	954.8	RGD
Cytogenetic Map	10	q31	UniSTS

Flank 2 / 1 (D10Rat120)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	88,132,392 - 88,132,643 (+)	MAPPER
Rnor_6.0	10	91,270,472 - 91,270,722	NCBI
Rnor_5.0	10	91,041,440 - 91,041,690	UniSTS
RGSC_v3.4	10	92,373,047 - 92,373,412	RGD
RGSC_v3.4	10	92,373,142 - 92,373,392	UniSTS
RGSC_v3.1	10	92,387,512 - 92,387,762	RGD
Celera	10	86,833,490 - 86,833,740	UniSTS
RH 3.4 Map	10	896.1	RGD
RH 3.4 Map	10	896.1	UniSTS
RH 2.0 Map	10	1003.1	RGD
FHH x ACI Map	10	72.5	RGD
Cytogenetic Map	10	q32.1	UniSTS

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.LEW-(D10Got125-D10Rat120)/Ayd

Mammalian Phenotype