Strain Report - Rat Genome Database

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Strain: SS.LEW-(D10Got125-D10Rat120)/Ayd

Symbol: SS.LEW-(D10Got125-D10Rat120)/Ayd
Strain: SS.LEW-(D10Got125-D10Rat120)
Substrain: Ayd
RGD ID: 728393
Citation ID: RRID:RGD_728393
Ontology ID: RS:0000843
Previously known as: S.LEW-D10Got125/D10Rat120; S.L14; SS.LEW-(D10Got125-D10Rat120)/Ayd
Type: congenic
Source: Centre Hospitalier de Universiti de Montrial, Quebec, Canada
Origin: A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21083,212,828 - 88,132,643RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01086,168,841 - 91,270,722RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01085,965,754 - 91,041,690RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41086,983,905 - 92,373,412RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. Comprehensive Congenic Coverage Revealing Multiple Blood Pressure Quantitative Trait Loci on Dahl Rat Chromosome 10. Palijan A, etal., Hypertension 2003 Oct;42(4):515-22. Epub 2003 Aug 25
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D10Got125)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21083,212,828 - 83,213,078 (+)MAPPER
Rnor_6.01086,168,841 - 86,169,090NCBI
Rnor_5.01085,965,754 - 85,966,003UniSTS
RGSC_v3.41086,983,905 - 86,984,155RGD
RGSC_v3.41086,983,906 - 86,984,155UniSTS
RGSC_v3.11086,998,276 - 86,998,525RGD
Celera1081,961,741 - 81,961,990UniSTS
RH 3.4 Map10846.3UniSTS
RH 3.4 Map10846.3RGD
RH 2.0 Map10954.8RGD
Cytogenetic Map10q31UniSTS

Flank 2 / 1 (D10Rat120)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21088,132,392 - 88,132,643 (+)MAPPER
Rnor_6.01091,270,472 - 91,270,722NCBI
Rnor_5.01091,041,440 - 91,041,690UniSTS
RGSC_v3.41092,373,047 - 92,373,412RGD
RGSC_v3.41092,373,142 - 92,373,392UniSTS
RGSC_v3.11092,387,512 - 92,387,762RGD
Celera1086,833,490 - 86,833,740UniSTS
RH 3.4 Map10896.1RGD
RH 3.4 Map10896.1UniSTS
RH 2.0 Map101003.1RGD
FHH x ACI Map1072.5RGD
Cytogenetic Map10q32.1UniSTS

Additional Information