Strain Report - Rat Genome Database

Name: SS.LEW-( D10Rat119-D10Mgh1 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.LEW-(D10Rat119-D10Mgh1)/Ayd

Symbol:

SS.LEW-(D10Rat119-D10Mgh1)/Ayd

Strain:

SS.LEW-(D10Rat119-D10Mgh1)

Substrain:

Ayd

RGD ID:

728388

Citation ID:

RRID:RGD_728388

Ontology ID:

RS:0000848

Previously known as:

S.LC10; S.LEW-D10Rat119/D10Mgh1; SS.LEW-(D10Rat119-D10Mgh1)/Ayd

Type:

congenic

Source:

Centre Hospitalier de Universiti de Montrial, Quebec, Canada

Origin:

A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	10	53,273,326 - 53,273,444	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	53,675,361 - 53,675,478	RGD_MAPPER_PIPELINE	RGSC3.4

Congenic Strains

SS.LEW-(D10Chm10-D10Rat11)/Ayd

SS.LEW-(D10Rat119-D10Mgh1)(D16Rat21-D16Rat112)/Ayd

SS.LEW-(D10Rat204-D10Rat9)/Ayd

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased systemic arterial blood pressure (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

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Clinical Measurement

mean arterial blood pressure

References

References - curated

#	Reference Title	Reference Citation
1.	Comprehensive Congenic Coverage Revealing Multiple Blood Pressure Quantitative Trait Loci on Dahl Rat Chromosome 10.	Palijan A, etal., Hypertension 2003 Oct;42(4):515-22. Epub 2003 Aug 25
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat119)

Rat Assembly	Chr	Position (strand)	Source
Rnor_5.0	10	53,273,326 - 53,273,444	NCBI
RGSC_v3.4	10	53,675,361 - 53,675,478	RGD
RGSC_v3.1	10	53,688,901 - 53,689,188	RGD
RH 3.4 Map	10	573.7	RGD
RH 3.4 Map	10	573.7	UniSTS
RH 2.0 Map	10	562.7	RGD
SHRSP x BN Map	10	45.3799	RGD
FHH x ACI Map	10	40.36	RGD

Flank 2 / 1 (D10Mgh1)

Rat Assembly	Chr	Position (strand)	Source
Celera	10	102,748,696 - 102,748,839	UniSTS
RH 2.0 Map	10	1407.7	RGD
Cytogenetic Map	10		RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.LEW-(D10Rat119-D10Mgh1)/Ayd

Mammalian Phenotype

Related Phenotype Data for Term "SS.LEW-(D10Rat119-D10Mgh1)/Ayd" (RS:0000848)