Strain Report - Rat Genome Database

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Strain: SS.LEW-(D5Mco34-D5Mco10)/Jr

Symbol: SS.LEW-(D5Mco34-D5Mco10)/Jr
Strain: SS.LEW-(D5Mco34-D5Mco10)
Substrain: Jr
RGD ID: 728156
Citation ID: RRID:RGD_728156
Ontology ID: RS:0000833
Also Known As: S.LEW (5) X3; SS.LEW-(D5Mco34-D5Mco10)/Jr
Type: congenic
Available Source: Not Available
Origination: Department of Physiology and Molecular Medicine, Medical College of Ohio, Toledo, Ohio 43614
Description: SS.LEW-(D5Rat130-D5Mco10)/Jr was selectively bred for 2 generation to fix the chromosome and then backcrossed with S strain
Inbred Generations: F20
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25161,481,433 - 161,481,680RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05168,109,415 - 168,109,659RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05171,686,510 - 171,686,754RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45168,173,895 - 168,174,140RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. Two closely linked interactive blood pressure QTL on rat chromosome 5 defined using congenic Dahl rats. Garrett MR and Rapp JP, Physiol Genomics 2002 Feb 28;8(2):81-6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D5Mco34)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map5 RGD

Flank 2 / 1 (D5Mco10)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,481,433 - 161,481,680 (+)MAPPER
Rnor_6.05168,109,415 - 168,109,659NCBI
Rnor_5.05171,686,510 - 171,686,754UniSTS
RGSC_v3.45168,173,895 - 168,174,140RGD
RGSC_v3.45168,173,896 - 168,174,140UniSTS
RGSC_v3.15168,184,083 - 168,184,328RGD
Celera5159,733,610 - 159,733,854UniSTS
Cytogenetic Map5q36UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics Longer congenic segment which retain the QTL allele for low blood pressure as compared to the parent S strain. 619649
strain_life_disease Has low blood pressure alleles. 619649