Strain Report - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: BN.PD-(D8Rat39-D8Rat35)/Cub

Symbol: BN.PD-(D8Rat39-D8Rat35)/Cub
Strain: BN.PD-(D8Rat39-D8Rat35)
Substrain: Cub
RGD ID: 728144
Citation ID: RRID:RGD_728144
Ontology ID: RS:0000235
Previously known as: BN-Lx/Cub; BN.PD-(D8Rat39-D8Rat35)/Cub
Type: congenic
Source: Institute of Biology and Medical Genetics, First Faculty of Medicine, Charles University in Prague, Prague, Czech Republic
Origin: This congenic strain has a segment of chr 8 from the polydactylous PD/Cub by backcrossing to the BN/Cub. The length of the differential segment is 10-15 cM.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2846,358,478 - 46,358,654RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0850,356,432 - 50,356,607RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0848,981,076 - 65,325,374RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4849,035,642 - 64,617,259RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Metabolic characterization of insulin resistance syndrome feature loci in three brown Norway-derived congenic strains. Seda O, etal., Folia Biol (Praha) 2002;48(3):81-8.


Position Markers

Flank 1 / 1 (D8Rat39)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2846,358,478 - 46,358,654 (+)MAPPER
Rnor_6.0850,356,432 - 50,356,607NCBI
Rnor_5.0848,981,076 - 48,981,251UniSTS
RGSC_v3.4849,035,744 - 49,035,919UniSTS
RGSC_v3.4849,035,642 - 49,036,100RGD
RGSC_v3.1849,044,511 - 49,044,686RGD
Celera845,940,691 - 45,940,864UniSTS
RH 3.4 Map8474.3RGD
RH 3.4 Map8474.3UniSTS
RH 2.0 Map8357.2RGD
SHRSP x BN Map836.87RGD
FHH x ACI Map837.95RGD
Cytogenetic Map8q23UniSTS

Flank 2 / 1 (D8Rat35)
Rat AssemblyChrPosition (strand)Source
Rnor_5.0865,325,025 - 65,325,374NCBI
RGSC_v3.4864,616,911 - 64,617,259RGD
RGSC_v3.1864,635,965 - 64,636,313RGD
RH 3.4 Map8729.7UniSTS
RH 3.4 Map8729.7RGD
RH 2.0 Map8569.7RGD
SHRSP x BN Map843.6499RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics This is a good model for metabolic studies. 632347
strain_life_disease Polydactyly-luxate syndrome can be determined in this congenic strain 632347
strain_phys_biochem Has lower triglyceride concentration as compared to the triple congenic strain BN.PD-(D8Rat39-D8Rat35),SHR-(D4Mgh2-Cd36),SHR-(D20Wox3-D20Mgh5)/Ipcv. 632347