Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SS.LEW-(D10Rat11-D10Mgh1)/Ayd

Symbol: SS.LEW-(D10Rat11-D10Mgh1)/Ayd
Strain: SS.LEW-(D10Rat11-D10Mgh1)
Substrain: Ayd
RGD ID: 728140
Citation ID: RRID:RGD_728140
Ontology ID: RS:0000819
Previously known as: S.L1; SS.LEW-(D10Rat11-D10Mgh1)/Um; SS.LEW-(D10Rat11-D10Mgh1)/Ayd
Type: congenic
Source: Research Centre-CHUM, Montreal, Quebec, Canada
Origin: Strains SS/Jr and LEW were bred for F1 then backcrossed to S to give BC1, this was backcrossed to S to give BC2 and so on till BC5, BC5 was crossed to S to duplicate the recombinant segment
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21096,120,911 - 96,121,100RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.21936,511,450 - 36,511,619RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01099,492,217 - 99,492,409RGD_MAPPER_PIPELINERnor6.0
Rnor_6.01940,571,888 - 40,572,056RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01099,184,058 - 99,184,250RGD_MAPPER_PIPELINERnor5.0
Rnor_5.01951,402,312 - 51,402,480RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.410100,633,512 - 100,633,982RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.41938,295,381 - 38,295,550RGD_MAPPER_PIPELINERGSC3.4





Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "SS.LEW-(D10Rat11-D10Mgh1)/Ayd" (RS:0000819)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure

References

References - curated
# Reference Title Reference Citation
1. Utilization of marker-assisted congenics to map two blood pressure quantitative trait loci in Dahl rats. Deng AY, etal., Mamm Genome 2001 Aug;12(8):612-6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Accelerated congenics for mapping two blood pressure quantitative trait loci on chromosome 10 of Dahl rats. Sivo Z, etal., J Hypertens 2002 Jan;20(1):45-53.

Region

Position Markers

Flank 1 / 1 (D10Rat11)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21096,120,911 - 96,121,100 (+)MAPPER
Rnor_6.01099,492,217 - 99,492,409NCBI
Rnor_5.01099,184,058 - 99,184,250UniSTS
RGSC_v3.410100,633,512 - 100,633,982RGD
RGSC_v3.410100,633,654 - 100,633,848UniSTS
RGSC_v3.110100,648,024 - 100,648,218RGD
Celera1094,766,403 - 94,766,596UniSTS
RH 3.4 Map101084.8UniSTS
RH 3.4 Map101084.8RGD
RH 2.0 Map101218.2RGD
SHRSP x BN Map1077.15RGD
FHH x ACI Map1082.4RGD

Flank 2 / 1 (D19Rat24)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21936,511,450 - 36,511,619 (-)MAPPER
Rnor_6.01940,571,888 - 40,572,056NCBI
Rnor_5.01951,402,312 - 51,402,480UniSTS
RGSC_v3.41938,295,381 - 38,295,550RGD
RGSC_v3.41938,295,382 - 38,295,550UniSTS
RGSC_v3.11938,300,262 - 38,300,431RGD
Celera1935,908,545 - 35,908,713UniSTS
RH 2.0 Map19446.0RGD
FHH x ACI Map1928.02RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease Blood pressure effects are directly linked to cardiac hypertrophy, this strain doesnot have the QTLs of interest hence did not show any change in the blood pressure 625380
strain_life_disease The mean arterial, diastolic and the systolic pressures are not significantly different as compared to the parental SS strain. 69734