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Strain Registration

Strain: SS.LEW-(D10Rat27-Igfbp4)/Ayd

Symbol: SS.LEW-(D10Rat27-Igfbp4)/Ayd
Strain: SS.LEW-(D10Rat27-Igfbp4)
Substrain: Ayd
RGD ID: 724577
Citation ID: RRID:RGD_724577
Ontology ID: RS:0000853
Previously known as: S.LEW-D10Rat27/Igfbp4; C10S.L11; SS.LEW-(D10Rat27-Igfbp4)/Ayd
Type: congenic
Source: Centre Hospitalier de Universiti de Montrial, Quebec, Canada
Origin: A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,452,992 - 84,007,272RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01075,983,662 - 86,962,563RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01074,127,825 - 86,759,484RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41077,091,834 - 87,834,315RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Epistasis, not numbers, regulates functions of clustered Dahl rat quantitative trait loci applicable to human hypertension. Charron S, etal., Hypertension. 2005 Dec;46(6):1300-8. Epub 2005 Nov 14.
2. Submegabase resolution of epistatically interacting quantitative trait loci for blood pressure applicable for essential hypertension. Chauvet C, etal., J Hypertens. 2008 May;26(5):893-901.
3. Distinct genomic replacements from Lewis correct diastolic dysfunction, attenuate hypertension, and reduce left ventricular hypertrophy in Dahl salt-sensitive rats. Deng AY, etal., J Hypertens. 2008 Oct;26(10):1935-1943.
4. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
5. Comprehensive Congenic Coverage Revealing Multiple Blood Pressure Quantitative Trait Loci on Dahl Rat Chromosome 10. Palijan A, etal., Hypertension 2003 Oct;42(4):515-22. Epub 2003 Aug 25
6. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat27)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,452,992 - 73,453,136 (+)MAPPER
Rnor_6.01075,983,662 - 75,983,805NCBI
Rnor_5.01074,127,825 - 74,127,968UniSTS
RGSC_v3.41077,091,892 - 77,092,035UniSTS
RGSC_v3.41077,091,834 - 77,092,169RGD
RGSC_v3.11077,106,262 - 77,106,405RGD
Celera1072,360,629 - 72,360,772UniSTS
RH 3.4 Map10681.99RGD
RH 3.4 Map10681.99UniSTS
RH 2.0 Map10766.2RGD
SHRSP x BN Map1050.9999RGD
FHH x ACI Map1059.2399RGD
Cytogenetic Map10q26UniSTS

Flank 2 / 1 (Igfbp4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21083,995,253 - 84,007,272 (+)NCBI
mRatBN7.2 Ensembl1083,989,591 - 84,007,225 (+)Ensembl
UTH_Rnor_SHR_Utx1088,939,170 - 88,951,179 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01088,437,283 - 88,449,292 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01083,829,446 - 83,841,461 (+)NCBI
Rnor_6.01086,950,555 - 86,962,563 (+)NCBI
Rnor_6.0 Ensembl1086,950,557 - 86,962,578 (+)Ensembl
Rnor_5.01086,747,476 - 86,759,484 (+)NCBI
RGSC_v3.41087,822,429 - 87,834,315 (+)NCBI
RGSC_v3.11087,836,798 - 87,848,684 (+)NCBI
Celera1082,736,335 - 82,748,330 (+)NCBI
RH 3.4 Map10860.1RGD
Cytogenetic Map10q31NCBI
Strain QTL Data
Symbol Name Trait
Am10 Aortic mass QTL 10 aorta mass   (VT:0002845)    
Bp150 Blood pressure QTL 150 arterial blood pressure trait   (VT:2000000)    
Bp281 Blood pressure QTL 281 arterial blood pressure trait   (VT:2000000)    
Cm104 Cardiac mass QTL 104 heart right ventricle mass   (VT:0007033)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics The strain exhibits a lower blood pressure compared with the SS progenitor strain. 704345