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Strain Registration

Strain: SS.LEW-(D10Rat17-D10Mgh1)/Ayd

Symbol: SS.LEW-(D10Rat17-D10Mgh1)/Ayd
Strain: SS.LEW-(D10Rat17-D10Mgh1)
Substrain: Ayd
RGD ID: 724575
Citation ID: RRID:RGD_724575
Ontology ID: RS:0000850
Previously known as: S.LEW-D10Rat17/D10Mgh1; S.L6; SS.LEW-(D10Rat17-D10Mgh1)/Ayd
Type: congenic
Source: Centre Hospitalier de Universiti de Montrial, Quebec, Canada
Origin: A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21090,627,439 - 90,627,625RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01093,886,117 - 93,886,300RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01093,641,751 - 93,641,934RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41095,066,219 - 95,066,632RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Submegabase resolution of epistatically interacting quantitative trait loci for blood pressure applicable for essential hypertension. Chauvet C, etal., J Hypertens. 2008 May;26(5):893-901.
2. Comprehensive Congenic Coverage Revealing Multiple Blood Pressure Quantitative Trait Loci on Dahl Rat Chromosome 10. Palijan A, etal., Hypertension 2003 Oct;42(4):515-22. Epub 2003 Aug 25
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat17)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21090,627,439 - 90,627,625 (+)MAPPER
Rnor_6.01093,886,117 - 93,886,300NCBI
Rnor_5.01093,641,751 - 93,641,934UniSTS
RGSC_v3.41095,066,310 - 95,066,493UniSTS
RGSC_v3.41095,066,219 - 95,066,632RGD
RGSC_v3.11095,080,680 - 95,080,863RGD
Celera1089,307,068 - 89,307,251UniSTS
RH 3.4 Map10949.1RGD
RH 3.4 Map10949.1UniSTS
RH 2.0 Map101057.9RGD
SHRSP x BN Map1069.01RGD
FHH x ACI Map1075.8199RGD
Cytogenetic Map10q32.1UniSTS

Flank 2 / 1 (D10Mgh1)
Rat AssemblyChrPosition (strand)Source
Celera10102,748,696 - 102,748,839UniSTS
RH 2.0 Map101407.7RGD
Cytogenetic Map10 RGD
Strain QTL Data
Symbol Name Trait
Bp149 Blood pressure QTL 149 arterial blood pressure trait   (VT:2000000)    

Additional Information