Strain Report - Rat Genome Database

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Strain: SS.BN-(D13Rat124-D13Rat101)/Mcwi

Symbol: SS.BN-(D13Rat124-D13Rat101)/Mcwi
Strain: SS.BN-(D13Rat124-D13Rat101)
Substrain: Mcwi
RGD ID: 6907445
RRID: RGD_6907445
Ontology ID: RS:0003366
Also known as: SS.BN-(D13Rat124-D13Rat101)/Mcwi; Ren1-SSB strain; line 13DC; line 9C
Type: congenic
Source: Medical College of Wisconsin, Milwaukee, Wisconsin
Origin: These were generated by crossing SS/JrHsdMcwi with SS-Chr 13BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,228,358 - 47,841,255RGD_MAPPER_PIPELINE
Rnor_6.01350,609,228 - 53,264,877RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01355,662,705 - 58,314,767RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41346,721,037 - 49,428,577RGD_MAPPER_PIPELINERGSC3.4






Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
1. Durand MJ, etal., Am J Physiol Heart Circ Physiol. 2010 Dec;299(6):H1865-74. Epub 2010 Sep 17.
2. RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D13Rat124)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,228,358 - 45,228,590 (+)MAPPER
Rnor_6.01350,609,228 - 50,609,459NCBI
Rnor_5.01355,662,705 - 55,662,936UniSTS
RGSC_v3.41346,721,038 - 46,721,269UniSTS
RGSC_v3.41346,721,037 - 46,721,269RGD
RGSC_v3.11346,735,081 - 46,735,312RGD
Celera1345,558,778 - 45,559,009UniSTS
RH 3.4 Map13174.1RGD
RH 3.4 Map13174.1UniSTS
RH 2.0 Map13377.4RGD
SHRSP x BN Map1314.7498RGD

Flank 2 / 1 (D13Rat101)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21347,841,075 - 47,841,255 (+)MAPPER
Rnor_6.01353,264,698 - 53,264,877NCBI
Rnor_5.01358,314,588 - 58,314,767UniSTS
RGSC_v3.41349,428,397 - 49,428,577RGD
RGSC_v3.41349,428,398 - 49,428,577UniSTS
RGSC_v3.11349,442,478 - 49,442,657RGD
Celera1348,152,996 - 48,153,175UniSTS
RH 3.4 Map13148.8UniSTS
RH 3.4 Map13148.8RGD
FHH x ACI Map1319.33UniSTS
FHH x ACI Map1319.33RGD
Strain QTL Data
Symbol Name Trait
Bp399 Blood pressure QTL 399 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics This congenic has a 2.6 Mbp fragment of BN chr 13 that contains the SS renin allele 6903245