Strain Report - Rat Genome Database

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Strain: WF.COP-(D2Uwm17-D2Rat16)/Uwm

Symbol: WF.COP-(D2Uwm17-D2Rat16)/Uwm
Strain: WF.COP-(D2Uwm17-D2Rat16)
Substrain: Uwm
RGD ID: 6903904
Citation ID: RRID:RGD_6903904
Ontology ID: RS:0003330
Previously known as: WF.COP-(D2Uwm17-D2Rat16)/Uwm; WF.COP-D2Uwm17/D2Rat16; line T
Type: congenic
Source: University of Wisconsin, Madison, Wisconsin, USA
Origin: A segment of chromosome 2 was transferred from COP into the WF background.
Inbred Generations: F10
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2232,373,770 - 43,665,178RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0231,224,612 - 43,643,900RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0250,381,686 - 62,691,053RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4232,051,319 - 43,376,636RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Congenic rats reveal three independent Copenhagen alleles within the Mcs1 quantitative trait locus that confer resistance to mammary cancer. Haag JD, etal., Cancer Res 2003 Sep 15;63(18):5808-12.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Uwm17)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,373,770 - 32,374,088 (+)MAPPER
Rnor_6.0231,224,612 - 31,224,929NCBI
Rnor_5.0250,381,686 - 50,382,003UniSTS
RGSC_v3.4232,051,319 - 32,051,634RGD
RGSC_v3.4232,051,320 - 32,051,637UniSTS
RGSC_v3.1231,971,688 - 31,972,003RGD
Celera228,374,451 - 28,374,776UniSTS
Cytogenetic Map2 RGD

Flank 2 / 1 (D2Rat16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,665,008 - 43,665,178 (+)MAPPER
Rnor_6.0243,643,731 - 43,643,900NCBI
Rnor_5.0262,690,884 - 62,691,053UniSTS
RGSC_v3.4243,376,466 - 43,376,635RGD
RGSC_v3.4243,376,467 - 43,376,636UniSTS
RGSC_v3.1243,304,699 - 43,304,868RGD
Celera239,447,656 - 39,447,823UniSTS
RH 3.4 Map2190.2UniSTS
RH 3.4 Map2190.2RGD
RH 2.0 Map2245.7RGD
SHRSP x BN Map218.4498RGD
FHH x ACI Map225.2699RGD

Additional Information