Strain Report - Rat Genome Database

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Strain: SS-Fgf5em5Mcwi

Symbol: SS-Fgf5em5Mcwi
Strain: SS-Fgf5em5
Substrain: Mcwi
RGD ID: 6484572
Citation ID: RRID:RGD_6484572
Ontology ID: RS:0003266
Alleles: Fgf5em5Mcwi
Also Known As: SS-Fgf5em5Mcwi; SS-Fgf5^[em5Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence TGGATCCCACGAAGCcagtgtGTTAAGTAAGTTGCT into SS/JrHsdMcwi rat embryos. The resulting mutation is a 2-bp deletion in exon 1.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21411,323,827 - 11,346,164RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01412,995,243 - 12,995,244RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01412,917,742 - 12,938,879RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41412,713,971 - 12,734,634RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Fgf5em5Mcwi-var1 chr14 12995243 12995244 AC - deletion Rnor_6.0

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-03 SS-Fgf5em5Mcwi    SS-Fgf5em5Mcwi    Symbol updated 68687 APPROVED
2014-04-03 SS-Fgf5em5Mcwi    SS-Fgf5em5Mcwi    Symbol updated 68687 APPROVED
2014-04-03 SS-Fgf5em5Mcwi    SS-Fgf5em5Mcwi    Name updated 68913 APPROVED
2014-04-03 SS-Fgf5em5Mcwi    SS-Fgf5em5Mcwi    Name updated 68913 APPROVED
2013-08-15 SS-Fgf5em5Mcwi    SS-Fgf5em5Mcwi    Name updated 68913 APPROVED
2013-08-15 SS-Fgf5em5Mcwi    SS-Fgf5em5Mcwi    Name updated 68913 APPROVED