Strain Report - Rat Genome Database

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Strain: SS-Slc34a1em1Mcwi

Symbol: SS-Slc34a1em1Mcwi
Strain: SS-Slc34a1em1
Substrain: Mcwi
RGD ID: 6484559
Citation ID: RRID:RGD_6484559
Ontology ID: RS:0003252
Alleles: Slc34a1em1Mcwi
Also Known As: SS-Slc34a1em1Mcwi; SS-Slc34a1^[em1Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence CGTGCTCAGCTCTGCCTTccaactGGCCGGAGGTAGGGCCCG into SS/JrHsdMcwi rat embryos. The resulting mutation is a 12-bp deletion in exon 4.
Last Known Status: Extinct (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,232,573 - 9,232,584RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0179,747,766 - 9,762,739RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01711,856,946 - 11,872,100RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41715,262,929 - 15,277,902RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Slc34a1em1Mcwi-var1 chr17 9232573 9232584 GCCAGTTGGAAG - deletion mRatBN7.2

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-31 SS-Slc34a1em1Mcwi    SS-Slc34a1em1Mcwi    Symbol updated 68687 APPROVED
2014-03-31 SS-Slc34a1em1Mcwi    SS-Slc34a1em1Mcwi    Name updated 68913 APPROVED
2014-03-31 SS-Slc34a1em1Mcwi    SS-Slc34a1em1Mcwi    Symbol updated 68687 APPROVED
2014-03-31 SS-Slc34a1em1Mcwi    SS-Slc34a1em1Mcwi    Name updated 68913 APPROVED