Strain Report - Rat Genome Database

Name: SS.LEW-( D10Rat207-D10Mgh1 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.LEW-(D10Rat207-D10Mgh1)/Ayd

Symbol:

SS.LEW-(D10Rat207-D10Mgh1)/Ayd

Strain:

SS.LEW-(D10Rat207-D10Mgh1)

Substrain:

Ayd

RGD ID:

631703

Citation ID:

RRID:RGD_631703

Ontology ID:

RS:0000851

Previously known as:

SS.LEW-(D10Rat207-D10Mgh1); S.L5; SS.LEW-(D10Rat207-D10Mgh1)/Ayd

Type:

congenic

Source:

Research Centre-CHUM

Origin:

Congenic strain originated from an inbred SS strain

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	85,887,040 - 85,887,185	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	88,865,454 - 88,865,596	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	88,662,536 - 88,662,678	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	89,896,421 - 89,896,564	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased systemic arterial blood pressure (IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Utilization of marker-assisted congenics to map two blood pressure quantitative trait loci in Dahl rats.	Deng AY, etal., Mamm Genome 2001 Aug;12(8):612-6.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat207)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	85,887,040 - 85,887,185 (+)	MAPPER
Rnor_6.0	10	88,865,454 - 88,865,596	NCBI
Rnor_5.0	10	88,662,536 - 88,662,678	UniSTS
RGSC_v3.4	10	89,896,421 - 89,896,564	RGD
RGSC_v3.4	10	89,896,422 - 89,896,564	UniSTS
RGSC_v3.1	10	89,910,791 - 89,910,934	RGD
Celera	10	84,604,693 - 84,604,835	UniSTS
SHRSP x BN Map	10	65.38	RGD
SHRSP x BN Map	10	65.38	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Flank 2 / 1 (D10Mgh1)

Rat Assembly	Chr	Position (strand)	Source
Celera	10	102,748,696 - 102,748,839	UniSTS
RH 2.0 Map	10	1407.7	RGD
Cytogenetic Map	10		RGD

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_life_disease	The mean arterial, diastolic and the systolic pressures are significantly different as compared to the parental SS strain.	69734

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.LEW-(D10Rat207-D10Mgh1)/Ayd

Mammalian Phenotype